Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0664
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 62 1e-10
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 62 2e-10
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 45 2e-05
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.29
10_01_0146 - 1719997-1720386,1721498-1721515 29 0.88
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 3.6
12_02_0219 + 15822050-15824896 27 4.7
12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332 27 6.2
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 27 6.2
04_04_1699 + 35462160-35462555,35463114-35463196,35463317-354633... 27 6.2
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 27 6.2
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 26 8.2
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 26 8.2
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 26 8.2
04_04_0176 - 23329589-23331043 26 8.2
02_05_0114 + 25958834-25961296 26 8.2
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 62.1 bits (144), Expect = 1e-10
Identities = 31/70 (44%), Positives = 43/70 (61%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPGCRI*KVKGPRFPGEKSTHQLREKGLIKQVVQH 295
+NN VLFD+ TY+KL EVP+YK ITP +++ ++ + L +GLI+ V H
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 96
Query: 296 HGQVIYTRAT 325
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 61.7 bits (143), Expect = 2e-10
Identities = 31/70 (44%), Positives = 43/70 (61%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPGCRI*KVKGPRFPGEKSTHQLREKGLIKQVVQH 295
+NN VLFD+ TY+KL EVP+YK ITP +++ ++ L ++GLI+ V H
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRGLIRMVSVH 96
Query: 296 HGQVIYTRAT 325
Q IYTRAT
Sbjct: 97 CSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 45.2 bits (102), Expect = 2e-05
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITP 196
+NN VLFDK TY+KL EVP+YK ITP
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITP 997
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 257 LREKGLIKQVVQHHGQVIYTRAT 325
L +G I+ V H Q+IYTRAT
Sbjct: 1102 LESRGAIRVVSVHSSQLIYTRAT 1124
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.29
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 7 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 132
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 29.5 bits (63), Expect = 0.88
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 3 RTRRLRPNSLKKHRRRRKDPVAAKPRRRS 89
R ++P+ + RRRR +P +PRRR+
Sbjct: 77 RAAEMQPDDGGQRRRRRSEPATTQPRRRA 105
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 13 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 129
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>12_02_0219 + 15822050-15824896
Length = 948
Score = 27.1 bits (57), Expect = 4.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -3
Query: 334 IALGRTRVDHLPMVLDYL---FD-ETFFPKLMSALLAREPRTFNLSDTT 200
+ L T D + + YL FD E KL+ L +EP T N+ DTT
Sbjct: 196 LPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAGKEPMTVNIYDTT 244
>12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332
Length = 524
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 210 QIRQPGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPPDP 55
++R P VI+ + G L+ + FN+ +PLD+F + A P P
Sbjct: 81 EVRYPDVIAAHRGCILF---VAAVPFEEPGFNVDGHYPLDYFIYSASPSSQP 129
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 370 FFNLYHSLCDWIIALGRTRVDHLP 299
+ NL+H++ DW A +RV LP
Sbjct: 345 YANLFHTITDWYSAYVSSRVTDLP 368
>04_04_1699 +
35462160-35462555,35463114-35463196,35463317-35463378,
35463745-35463806,35463932-35463991,35464079-35464111,
35464196-35464261,35464349-35464393
Length = 268
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 9 RRLRPNSLKKHRRRRKDPVAAKPRRRSGP 95
R+ P KHRR R D A PR+R P
Sbjct: 31 RQRPPPGPTKHRRLRHDADAQPPRKRGHP 59
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 199 LSYLKG*RSEVPWREEHSST*GKRSHQTGSPTPWAGDLHACDQGR*SSR-INYDIS 363
+ Y++ RS + E+H S+ KR + SP+P GD H+ + R SSR + Y+ S
Sbjct: 606 IDYVEDHRSS-DYAEDHRSS--KRM-RASSPSPTGGDRHSRARSRYSSRKLTYEDS 657
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 179 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 48
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 264 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 306
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 248 THQLREKGLIKQVVQHHG 301
TH++R + LI+QV+QH G
Sbjct: 1455 THKMRAEHLIRQVLQHLG 1472
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -2
Query: 119 STCHELFLWTTSSSWLCRHRILPSSSVFF--EAVWPKPSRP 3
STCH++ L S WL L S + F E VW P P
Sbjct: 261 STCHKMQLPFKLSDWLSTVPTLTSLHLDFQDEMVWILPEEP 301
>04_04_0176 - 23329589-23331043
Length = 484
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 4 GREGFGQTASKNTEEEGRIRWRQSQEEEVVQR 99
GR+GF + EE GR R R +EE +R
Sbjct: 405 GRDGFDLSRKHGHEERGRYRPRVLEEEREHER 436
>02_05_0114 + 25958834-25961296
Length = 820
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 179 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 48
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 146 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,093,950
Number of Sequences: 37544
Number of extensions: 240455
Number of successful extensions: 742
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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