Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0664
(372 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0) 87 6e-18
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19) 28 2.8
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 28 2.8
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2) 27 3.7
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 27 6.4
SB_42547| Best HMM Match : AMP-binding (HMM E-Value=1.1e-05) 27 6.4
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21) 27 6.4
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 26 8.5
SB_23978| Best HMM Match : ERF (HMM E-Value=2) 26 8.5
>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
Length = 115
Score = 86.6 bits (205), Expect = 6e-18
Identities = 42/74 (56%), Positives = 53/74 (71%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPGCRI*KVKGPRFPGEKSTHQLREKGLIKQVVQH 295
LNN VLFDK TY+KLYKEVP Y+LITP ++K ++ +L+ KGLIK+V +H
Sbjct: 41 LNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKH 100
Query: 296 HGQVIYTRATKGDD 337
H Q+IYTRATKG D
Sbjct: 101 HSQLIYTRATKGAD 114
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 3 RTRRLRPNSLKKHRRRRKDPVAAKPRRR 86
R RR P RRRRK P + PRRR
Sbjct: 907 RRRRDSPTPSPPPRRRRKSPSPSPPRRR 934
>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
Length = 111
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 215 VKGPRFPGEKSTHQLREKGLIKQVVQHHG 301
VKG G T +L + G +KQ++Q HG
Sbjct: 77 VKGQSIGGGMETAELYQSGKLKQLLQDHG 105
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 3 RTRRLRPNSLKKHRRRRKDPVAAKPRRRSG 92
R R+ RP +++RR RK P+ R +SG
Sbjct: 554 RGRKRRPRLGRRNRRLRKTPIVCTKRGKSG 583
>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
Length = 1244
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 171 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 88
+SL+ G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 249 VLFSPGNLGPLTFQIRQPGVISLYCGTSLYSFSYVG 142
++F G PL Q+++ I++ CG S S+VG
Sbjct: 1086 LIFFYGFFSPLCIQVKERISITILCGNSDIQSSFVG 1121
>SB_42547| Best HMM Match : AMP-binding (HMM E-Value=1.1e-05)
Length = 529
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 206 YDSQV*LACTVGLPCTVSHMW 144
YDS L CT PC +H W
Sbjct: 380 YDSSGELICTKPFPCMPTHFW 400
>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 24 NSLKKHRRRRKDPVAAKPRRRSGPK 98
N KH ++K PV P+R GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328
>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
Length = 683
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 126 WLFNLSRTFPLDHFFFLALPPPDPSFFFC--VF*GCLAEAFASF 1
WL + TFPL + + + P DP ++C +F G +F S+
Sbjct: 154 WLAATAITFPLFMYSKMVMSPFDPDTYWCFVLFPGDSLSSFPSY 197
>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1453
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 21 PNSLKKHRRRRKDPVAAKPRRRSGPKEK 104
PN+LK+ +RR + KP RS K +
Sbjct: 67 PNALKREKRRTTNSANRKPANRSPSKRE 94
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 9 RRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 104
R L + K HR RR+ +A +PR +GP EK
Sbjct: 190 RNLAGPAEKPHRSRRETQLA-QPRNPTGPAEK 220
>SB_23978| Best HMM Match : ERF (HMM E-Value=2)
Length = 282
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 129 CCLINPHMRNCTRKSHSTS*SHLAVVSERLKVRG 230
C +RNC K+ S HL V ER+++ G
Sbjct: 75 CAFTESILRNCGFKTGFYSSPHLIEVRERIRING 108
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,582,919
Number of Sequences: 59808
Number of extensions: 276234
Number of successful extensions: 831
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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