Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0664
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    83   8e-17
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   0.80 
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   0.80 
Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AF106573-4|AAF02105.1|  365|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    27   4.3  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   5.7  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   5.7  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   5.7  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   7.5  
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 82.6 bits (195), Expect = 8e-17
 Identities = 41/76 (53%), Positives = 51/76 (67%)
 Frame = +2

Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPGCRI*KVKGPRFPGEKSTHQLREKGLIKQVVQH 295
           LNN VLFD+ TY+KLYKEV  YKLITP     ++K      +    +L+ KGL+K VV H
Sbjct: 40  LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHH 99

Query: 296 HGQVIYTRATKGDDPV 343
           HGQV+YTRATK  D +
Sbjct: 100 HGQVVYTRATKEADVI 115


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 3   RTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 104
           R RR    S  +  RRR+ P AA PRRR  P+ +
Sbjct: 465 RRRRSPSGSKSRSPRRRRSPAAA-PRRRQSPQRR 497


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 1   EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 102
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical
           protein K09E9.1 protein.
          Length = 508

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 217 NLSDTTARCD*LVLWDFLVQFLICGFIKQHL 125
           N + TTA    L++W  L+   +CGF+   L
Sbjct: 110 NSNQTTAMMSSLLMWGALIGSFVCGFLSDRL 140


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 144  PHMRNCTRKSHSTS*SHLAVVSERLKVRGSLARRALINLGK 266
            PH      K HS    HL ++ +R +V  S  RR  IN GK
Sbjct: 1042 PHFTGSQSKRHSGDQEHLHLLQQRTEVLRSSFRRG-INAGK 1081


>AF106573-4|AAF02105.1|  365|Caenorhabditis elegans Hypothetical
           protein F52D2.7 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 219 LTFQIRQPGVISLY-CGTSLYSFSYVGLSN 133
           L F +  P ++ L+  G  LY+ SYVGLSN
Sbjct: 129 LMFFVLDPSIMFLFESGYCLYTDSYVGLSN 158


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = -3

Query: 322  RTRVDHLPM--VLDY-LFDETFFPKLMSALLAREPRTFNLSDTTARCD*LVLWDFLVQFL 152
            +T V HLP   V DY  F  +F+P+L    L+ E     + +T      +     L+   
Sbjct: 2099 KTGVIHLPAAYVRDYYFFHRSFYPQLTLVKLSPEVAEKKMKETAFHQKFIECGKVLLTHN 2158

Query: 151  ICGFIKQHLVVQLV 110
            I  +  QH++ Q V
Sbjct: 2159 ILKYSPQHVIAQRV 2172


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = -3

Query: 322  RTRVDHLPM--VLDY-LFDETFFPKLMSALLAREPRTFNLSDTTARCD*LVLWDFLVQFL 152
            +T V HLP   V DY  F  +F+P+L    L+ E     + +T      +     L+   
Sbjct: 2108 KTGVIHLPAAYVRDYYFFHRSFYPQLTLVKLSPEVAEKKMKETAFHQKFIECGKVLLTHN 2167

Query: 151  ICGFIKQHLVVQLV 110
            I  +  QH++ Q V
Sbjct: 2168 ILKYSPQHVIAQRV 2181


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 42  RRRRKDPVAAKPRRRSGP 95
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 42  RRRRKDPVAAKPRRRSGP 95
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
 Frame = -2

Query: 173 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 54
           GL    +  W  YQ    CS    TC   F W     W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 44  SVFFEAVWPKPSR 6
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 122 CSTCHELFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRP 3
           C    + F+     +  C   +LP+ S+  E   PKP RP
Sbjct: 44  CRMQDDCFIGEICDNGFCCPNVLPTFSLQREPTSPKPKRP 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,207,716
Number of Sequences: 27780
Number of extensions: 199821
Number of successful extensions: 615
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)