Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0664
(372 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 63 5e-11
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 62 9e-11
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 62 9e-11
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 58 2e-09
At5g64950.1 68418.m08170 mitochondrial transcription termination... 29 0.99
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 29 1.3
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 27 4.0
At5g13360.1 68418.m01539 auxin-responsive GH3 family protein sim... 27 5.3
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 27 5.3
At1g35650.1 68414.m04431 Ulp1 protease family protein PF02902: U... 27 5.3
At1g24706.1 68414.m03104 expressed protein 27 5.3
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa... 26 7.0
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa... 26 7.0
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 26 7.0
At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT) id... 26 9.2
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 26 9.2
At4g36670.1 68417.m05203 mannitol transporter, putative similar ... 26 9.2
At4g27630.1 68417.m03971 expressed protein 26 9.2
At4g17660.1 68417.m02639 protein kinase, putative similar to pro... 26 9.2
At2g46535.1 68415.m05804 expressed protein 26 9.2
At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter c... 26 9.2
At1g61130.1 68414.m06887 serine carboxypeptidase S10 family prot... 26 9.2
>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
Length = 108
Score = 63.3 bits (147), Expect = 5e-11
Identities = 31/72 (43%), Positives = 43/72 (59%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPGCRI*KVKGPRFPGEKSTHQLREKGLIKQVVQH 295
+NN VLFD+ TY+KL E P++KLITP +++ ++ +L KG I+ V H
Sbjct: 37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96
Query: 296 HGQVIYTRATKG 331
Q IYTRAT G
Sbjct: 97 SSQQIYTRATHG 108
>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
ribosomal protein S25, Lycopersicon esculentum,
PIR2:S40089
Length = 108
Score = 62.5 bits (145), Expect = 9e-11
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPGCRI*KVKGPRFPGEKSTHQLREKGLIKQVVQH 295
+NN VLFD+ TY+KL E P++KLITP +++ ++ +L KG+I+ V H
Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96
Query: 296 HGQVIYTRAT 325
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
Length = 108
Score = 62.5 bits (145), Expect = 9e-11
Identities = 31/70 (44%), Positives = 43/70 (61%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPGCRI*KVKGPRFPGEKSTHQLREKGLIKQVVQH 295
+NN VLFD+ TY+KL E P++KLITP +++ ++ +L KGLI+ V H
Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96
Query: 296 HGQVIYTRAT 325
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)
Length = 125
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/70 (42%), Positives = 40/70 (57%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPGCRI*KVKGPRFPGEKSTHQLREKGLIKQVVQH 295
+NN VLFD+ TY+KL E P++KLITP +++ K+ L KG I+ V H
Sbjct: 53 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTH 112
Query: 296 HGQVIYTRAT 325
Q I TRAT
Sbjct: 113 SSQQINTRAT 122
>At5g64950.1 68418.m08170 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 391
Score = 29.1 bits (62), Expect = 0.99
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 352 SLCDWIIALGRTRVDHLPMVLDYLFDETFFPKLMSALLAREPRTFNLSDTTAR 194
S C W++ + LP + YL +++LL R+PR FNLS+ R
Sbjct: 166 SRCGWLLLSRDPNLFLLPNI-SYLETCGIVGSQLASLLRRQPRIFNLSEEKLR 217
>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 436
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 180 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 40
+C LY+F + + + TW F + + + + +A+ P+P F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -1
Query: 198 PGVISLY-CGTSLYSFSYVG 142
PG I LY CG + Y FS++G
Sbjct: 26 PGKIGLYVCGITAYDFSHIG 45
>At5g13360.1 68418.m01539 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 594
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 328 LGRTRVDHLPMVLDYLFDETFFPKLMSALLAREPRTFNLSDTTARCD 188
+GR +V L + +D +DE + +A L EP L D T+R D
Sbjct: 424 VGRQKVV-LSIDMDKTYDEDLLKAVTNASLLLEPHDLMLMDFTSRVD 469
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 154 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 62
++CG + +H V++L F+ G L +GF T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243
>At1g35650.1 68414.m04431 Ulp1 protease family protein PF02902: Ulp1
protease family, C-terminal catalytic domain; similar to
At1g21020, At3g26530, At1g08760, At1g08740, At2g29240
Length = 736
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 60 PVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRNCTRKSHSTS*SHLAVVSERL-KVRG 230
P ++KPR+ G K+K + T + P + N + + ++ H+++ + + KVRG
Sbjct: 296 PGSSKPRKTKGQKQKRGNNGPTAATIPTPAVDNSSGEKSLSADKHVSLEAVNINKVRG 353
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 117 NLSRTFPLDHFFFLALPPPDP 55
+L ++ P DHF LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582
>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 885
Score = 26.2 bits (55), Expect = 7.0
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -1
Query: 225 GPLTFQIRQPGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPPDPSF 49
G LTF + PG+I+ Y + S G S+ LFN F + F + P P F
Sbjct: 627 GGLTFPLNPPGIINSY---NEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAPGF 682
>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 873
Score = 26.2 bits (55), Expect = 7.0
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -1
Query: 225 GPLTFQIRQPGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPPDPSF 49
G LTF + PG+I+ Y + S G S+ LFN F + F + P P F
Sbjct: 627 GGLTFPLNPPGIINSY---NEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAPGF 682
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
CAF protein [Arabidopsis thaliana] GI:6102610; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain, PF03368: Domain of
unknown function, PF00636: RNase3 domain, PF00035:
Double-stranded RNA binding motif
Length = 1676
Score = 26.2 bits (55), Expect = 7.0
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 295 VLDYLFDETFF---PKLMSALLAREPRTFNLSDTTARCD*LVLWDFLVQFLICGFIKQHL 125
VLDYL FF PKL L + R+ ++++ A + V + L +FL C I H
Sbjct: 1310 VLDYLMTSYFFTVFPKLKPGQLT-DLRSLSVNNE-ALANVAVSFS-LKRFLFCESIYLHE 1366
Query: 124 VVQLVTNF 101
V++ TNF
Sbjct: 1367 VIEDYTNF 1374
>At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT)
identical to SP|Q9LDH0
Length = 534
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 370 FFNLYHSLCDWIIALGRTRVDHLP 299
+ NL+H++ DW A +RV LP
Sbjct: 246 YANLFHTVTDWYSAYVSSRVTGLP 269
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -1
Query: 180 YCGTSLYSFSYVGLSNNTWLFNLSRTFPL--DHFFFLALPPPDPSF 49
Y T++ S + W FN + + DHFF LA P PSF
Sbjct: 566 YVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPSF 611
>At4g36670.1 68417.m05203 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 493
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 192 VISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPL 94
V+S+ S +F +GL TW+++ S FPL
Sbjct: 377 VLSIVAAYSFVAFFSIGLGPITWVYS-SEVFPL 408
>At4g27630.1 68417.m03971 expressed protein
Length = 348
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 309 ITCPWCWTTCLMRPFSL 259
I P CWTT L PF L
Sbjct: 4 ILSPTCWTTLLKHPFIL 20
>At4g17660.1 68417.m02639 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 388
Score = 25.8 bits (54), Expect = 9.2
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -3
Query: 283 LFDETFFPKLMSALLARE-PRTFNLSDTTARCD*LVLWDFLVQFLICGFIKQHLVVQLVT 107
L +E F PKL LARE P N TTAR +++I G +K H V
Sbjct: 228 LLNEEFHPKLSDFGLAREGPEGDNTHVTTARVG--TDGYAAPEYVITGHLKTHCDV---- 281
Query: 106 NFSFGPLL 83
+SFG +L
Sbjct: 282 -YSFGVVL 288
>At2g46535.1 68415.m05804 expressed protein
Length = 175
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 166 GSPTVQANHTWLSYLKG*RSEVPWREE 246
G +V+ +H W S KG + +PW+ +
Sbjct: 142 GGGSVKGSHFWGSLCKGLKLAMPWKNK 168
>At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter
contains transmembrane domains; identical to
UDP-galactose/UDP-glucose transporter (GI:22651763)
[Arabidopsis thaliana] similar to UGTrel1 (GI:1669564)
[Rattus rattus]; identical to cDNA
UDP-galactose/UDP-glucose transporter GI:22651762
Length = 332
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 175 WDFLVQFLICGFIKQHLVVQLVTNF 101
WD L ++ ICG + Q+ + ++NF
Sbjct: 245 WDIL-KYCICGAVGQNFIFMTISNF 268
>At1g61130.1 68414.m06887 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II-3 precursor
(SP:P52711) (CP-MII.3. [Hordeum vulgare]
Length = 463
Score = 25.8 bits (54), Expect = 9.2
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 155 KLYKEVPQYKLITPGCRI*KVKGPRFPGEKSTHQLREKGLIKQVVQHHGQVIYTRA 322
K YKE+ Q+ L TP C K + K+T G + + +V Y RA
Sbjct: 271 KQYKEIDQFSLYTPICMHHSSKVDSYANYKTTIPRLFDG-FDPCLDDYAKVFYNRA 325
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,755,237
Number of Sequences: 28952
Number of extensions: 186920
Number of successful extensions: 586
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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