Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0663
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)               101   2e-22
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.006

>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score =  101 bits (243), Expect = 2e-22
 Identities = 46/53 (86%), Positives = 51/53 (96%)
 Frame = +3

Query: 96  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 254
           M +RKAVIKNADM+E+MQ DA++CATQALEKFNIEKDIAAFIKKEFDKKYNPT
Sbjct: 1   MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPT 53



 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 33/35 (94%), Positives = 34/35 (97%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQXAILLFKSG 361
           HCIVGRNFGSYVTHET+HFIYFYLGQ AILLFKSG
Sbjct: 55  HCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +3

Query: 114 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAA-FIKKEFDKKYNPTGIASW 269
           +I+ +DM++EM+ +A++    A EKF+   + AA  IK+  DKK+     ASW
Sbjct: 26  LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFG----ASW 74



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQXAILL 349
           H +VG  FG  +THE R+ +Y + G+   +L
Sbjct: 75  HAVVGEGFGFEITHEVRNLLYMFFGKYTTIL 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,673,578
Number of Sequences: 59808
Number of extensions: 240272
Number of successful extensions: 648
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)