Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0663
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15930.1 68417.m02419 dynein light chain, putative similar to... 73 8e-14
At1g23220.1 68414.m02904 dynein light chain type 1 family protei... 50 9e-07
At5g20110.1 68418.m02394 dynein light chain, putative similar to... 48 3e-06
At4g27360.1 68417.m03927 dynein light chain, putative similar to... 48 3e-06
At1g52250.1 68414.m05895 dynein light chain type 1 family protei... 46 1e-05
At3g16120.1 68416.m02036 dynein light chain, putative similar to... 44 8e-05
At3g55450.1 68416.m06158 protein kinase, putative similar to pro... 29 2.3
At2g39660.1 68415.m04864 protein kinase, putative similar to pro... 28 3.0
At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid t... 28 3.0
>At4g15930.1 68417.m02419 dynein light chain, putative similar to
dynein light chain 2 [Mus musculus] GI:15545995;
contains Pfam profile PF01221: Dynein light chain type 1
Length = 103
Score = 73.3 bits (172), Expect = 8e-14
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +2
Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQXAILLFKSG 361
HCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 69 HCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 103
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/61 (50%), Positives = 46/61 (75%)
Frame = +3
Query: 105 RKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTGIASWVXILA 284
++AVIK+ADM ++MQ++A++ A A EK+++EKDIA IKKEFDKK+ A+W I+
Sbjct: 18 KRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHG----ATWHCIVG 73
Query: 285 R 287
R
Sbjct: 74 R 74
>At1g23220.1 68414.m02904 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 129
Score = 50.0 bits (114), Expect = 9e-07
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2
Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQXAILLFKS 358
HCIVG +FGSYVTH T F+YF + + +LLFK+
Sbjct: 88 HCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFKT 121
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 60 VHLSKQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKD---IAAFIKKE 230
+ K K+ QD+ + ++ +DM Q A + + L + D +A +KK+
Sbjct: 19 IQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKD 78
Query: 231 FDKKYNP 251
FD Y P
Sbjct: 79 FDSAYGP 85
>At5g20110.1 68418.m02394 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 209
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2
Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQXAILLFKS 358
HCIVG +FGS+VTH T FIYF + + +LLFK+
Sbjct: 168 HCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKT 201
Score = 34.7 bits (76), Expect = 0.035
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 126 ADMSEEMQQDAVDCATQ---ALEKFNIEKDIAAFIKKEFDKKYNP 251
ADM MQ A CA +LEKF+ K +A +KKEFDK Y P
Sbjct: 122 ADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGYGP 165
>At4g27360.1 68417.m03927 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 103
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Frame = +3
Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEK--DIAAFIKKEFDKKY 245
M + KAV+ + DM + M++DA+ A++AL+ F++ + IA FIKKEFD+ Y
Sbjct: 1 MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSY 52
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 260 CIVGRNFGSYVTHETRHFIYFYLGQXAILLFK 355
CIVG +FGS+VTH + FI+F +G ILLFK
Sbjct: 58 CIVGTHFGSFVTHCSGCFIHFSVGSLTILLFK 89
>At1g52250.1 68414.m05895 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 94
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Frame = +3
Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKY 245
M + KA+++++DM +MQ A+ A+QAL+ F++ K IA IKKEFD++Y
Sbjct: 1 MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERY 52
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 260 CIVGRNFGSYVTHETRHFIYFYLGQXAILLFKSG*T 367
C+VG NFG + TH FIYF L L+FK T
Sbjct: 58 CVVGSNFGCFFTHSKGTFIYFQLETLKFLIFKGAST 93
>At3g16120.1 68416.m02036 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 93
Score = 43.6 bits (98), Expect = 8e-05
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +3
Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDKKY 245
M + KA ++ DM +MQ A+ A+Q+L+ F++ IAA IKKEFD++Y
Sbjct: 1 MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERY 52
Score = 42.7 bits (96), Expect = 1e-04
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 260 CIVGRNFGSYVTHETRHFIYFYLGQXAILLFK 355
C+VG NFG + TH FIYF+LG L+FK
Sbjct: 58 CVVGTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89
>At3g55450.1 68416.m06158 protein kinase, putative similar to
protein kinase APK1B [Arabidopsis thaliana]
SWISS-PROT:P46573
Length = 389
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 405 RPLLTKKXK*C*MV*PLLKSSIAXXPR*K*MKWRVSCVTYEPKXRPTM 262
RP LT + K +V L S + V C+++EPK RPTM
Sbjct: 290 RPYLTSRRKVLLIVDTRLNSQYKPEGAVRLASIAVQCLSFEPKSRPTM 337
>At2g39660.1 68415.m04864 protein kinase, putative similar to
protein kinase gi|166809|gb|AAA18853
Length = 395
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 405 RPLLTKKXK*C*MV*PLLKSSIAXXPR*K*MKWRVSCVTYEPKXRPTM 262
RP LT K K +V L + + V C+++EPK RPTM
Sbjct: 295 RPYLTSKRKVLLIVDNRLDTQYLPEEAVRMASVAVQCLSFEPKSRPTM 342
>At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid
transfer protein (LTP)-related similar to geranyl
diphosphate synthase large subunit [Mentha x piperita]
GI:6449052
Length = 205
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -1
Query: 235 SNSFLMNAAMSFSML--NFSSA*VAQSTASCCISSLMS 128
SNSFL++AA+ FS+L N ++ +AQ C S L S
Sbjct: 3 SNSFLISAALIFSLLSSNSPTSILAQINTPCSPSMLSS 40
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,415,431
Number of Sequences: 28952
Number of extensions: 157794
Number of successful extensions: 458
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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