Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0661
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 73 9e-14
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 73 9e-14
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 6e-09
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 30 0.64
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 28 2.0
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 27 3.4
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 27 4.5
02_05_0114 + 25958834-25961296 27 4.5
11_06_0177 + 20936072-20937550 27 6.0
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 27 6.0
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 27 6.0
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 6.0
05_03_0497 - 14715267-14715548,14715648-14715830,14715911-147166... 27 6.0
02_03_0349 + 18010414-18014283 27 6.0
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 26 7.9
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 26 7.9
01_06_0968 + 33466574-33466607,33467087-33467115,33467438-334675... 26 7.9
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 72.5 bits (170), Expect = 9e-14
Identities = 32/51 (62%), Positives = 43/51 (84%)
Frame = +2
Query: 107 RDKLNNQVLXDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDL 259
++K+NN VL D+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ DL
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDL 84
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYTRAT 324
L ++GLI+ V H Q IYTRAT
Sbjct: 84 LMDRGLIRMVSVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 72.5 bits (170), Expect = 9e-14
Identities = 32/51 (62%), Positives = 43/51 (84%)
Frame = +2
Query: 107 RDKLNNQVLXDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDL 259
++K+NN VL D+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ DL
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDL 84
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRAT 324
++ + L +GLI+ V H Q IYTRAT
Sbjct: 79 RAINDLMTRGLIRMVSVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 56.4 bits (130), Expect = 6e-09
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +2
Query: 107 RDKLNNQVLXDKPTYEKLYKEVPQYKLITPAVVSERLK 220
++K+NN VL DK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 968 KEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYTRAT 324
L +G I+ V H Q+IYTRAT
Sbjct: 1102 LESRGAIRVVSVHSSQLIYTRAT 1124
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 29.9 bits (64), Expect = 0.64
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 7 REGFGQTASKNTEEEGRIRWRQSXEEEVVQRKSS*QVEQPGV 132
R G G + + E G+ +WR+ EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 28.3 bits (60), Expect = 2.0
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2
Query: 104 VRDKLNNQVLXDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVS 274
V+D + L DKP YE L P + L+ S+ + VR + A L DL K VS
Sbjct: 187 VKDSVKEDKLRDKPGYEHL--NDPLHVLVEAEFPSDIVDVRLNQAVAILEDLLKPVS 241
>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 119 NNQVLXDKPTYEKLYKEVPQYKLITPAVVSERL--KVRGSLARRALIDLGKKVSSNR 283
NN+V+ KP Y ++P + +V++++ K+ G L+ + ID+ + ++ R
Sbjct: 1156 NNEVIQQKPIYVVFDGKLPGVYISFEEIVAQKIDAKLMGGLSWKKYIDIDEALTQAR 1212
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 179 TVGLPCTVSHMWVYXTTPGCSTCHELFLWTTSSSWLCRHRILPS 48
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 264 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 306
>02_05_0114 + 25958834-25961296
Length = 820
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 179 TVGLPCTVSHMWVYXTTPGCSTCHELFLWTTSSSWLCRHRILPS 48
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 146 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 188
>11_06_0177 + 20936072-20937550
Length = 492
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 102 FPLDHFFFXALPPPDP 55
FPLD+ FF PPP P
Sbjct: 218 FPLDYAFFDGGPPPRP 233
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 247 THRLREKGLIKQVVQHHG 300
TH++R + LI+QV+QH G
Sbjct: 1455 THKMRAEHLIRQVLQHLG 1472
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 261 PKSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSXNTWLFNLS 109
PKS S LL E R T A I ++C + S+ L N LF +S
Sbjct: 585 PKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESH-WLHLNQSLFRVS 634
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 13 GFGQTASKNTEEEGRIRWRQSXEEEVVQRKSS*QVEQPG 129
GFG S N+ +RWR +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>05_03_0497 - 14715267-14715548,14715648-14715830,14715911-14716668,
14716762-14717167,14717274-14717399,14717506-14717625,
14717675-14718463,14718554-14718709,14718800-14718898,
14718989-14719108,14719165-14719251
Length = 1041
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 219 FNLSDTTAGVISLYCGTSLYSFSYVGLSXNT--WLFNLSRTFPLDHFFF 79
F ++ A +I++Y +G S WLF++ FPLD F F
Sbjct: 882 FLIAQLMATLIAVYANWPFAKMKGIGWSWGMVIWLFSIVTFFPLDIFKF 930
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 140 KPTYEKLYKEVPQYKLITPAVVSERL 217
KPT E+L K +PQ K++ AV E +
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHI 64
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 363 NLYHSLCDWIIALGRTRVDHLP 298
NL+H++ DW A +RV LP
Sbjct: 347 NLFHTITDWYSAYVSSRVTDLP 368
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -2
Query: 119 STCHELFLWTTSSSWLCRHRILPSSSVFF--EAVWPKPSRP 3
STCH++ L S WL L S + F E VW P P
Sbjct: 261 STCHKMQLPFKLSDWLSTVPTLTSLHLDFQDEMVWILPEEP 301
>01_06_0968 +
33466574-33466607,33467087-33467115,33467438-33467595,
33468319-33468436,33468520-33468708,33469008-33469343,
33469468-33469569,33469696-33469890,33469993-33470155,
33470314-33470579,33470670-33470765,33470860-33471255,
33471403-33471501
Length = 726
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -1
Query: 294 VLDYLFD----ETFFPKSMSALLAREPRTFNLSDTTAGVISL 181
V+D+L D TFFP+ +S + T+ SD GVI L
Sbjct: 281 VVDFLMDPYNYRTFFPEVISGAVTNRIYTWPTSDGYNGVIQL 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,433,929
Number of Sequences: 37544
Number of extensions: 210897
Number of successful extensions: 594
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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