Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0661
         (363 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)               98   2e-21
SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)           27   4.6  
SB_43450| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)                      27   6.0  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 52/89 (58%), Positives = 59/89 (66%)
 Frame = +2

Query: 2   KDAKASAKQPQKTQXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLXDKPTYEKLYKEVPQY 181
           KD K  AK+PQK Q                    VRDKLNN VL DK TY+KLYKEVP Y
Sbjct: 4   KDPKKDAKKPQKAQKPAGSGGGKAKKKKWSKGK-VRDKLNNLVLFDKATYDKLYKEVPSY 62

Query: 182 KLITPAVVSERLKVRGSLARRALIDLGKK 268
           +LITP+VVSERLK+RGSLARRAL++L  K
Sbjct: 63  RLITPSVVSERLKIRGSLARRALLELQSK 91



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +1

Query: 256 LREKGLIKQVVQHHGQVIYTRATKGDD 336
           L+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 88  LQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 306 HLPMVLDYLFDETFFPKSMSALLAREPRTFNLSDTTAGVI 187
           H  +  DY F ET+ P+S+   L       N+SDT+ GV+
Sbjct: 165 HDQLYPDYAFAETWMPESIVNGLRALGHKVNVSDTSHGVV 204


>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
          Length = 111

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 214 VKGPRFPGEKSTHRLREKGLIKQVVQHHG 300
           VKG    G   T  L + G +KQ++Q HG
Sbjct: 77  VKGQSIGGGMETAELYQSGKLKQLLQDHG 105


>SB_43450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 126 WLFNLSRTFPLDHFFFXALPPPDPSFFFCVF 34
           W   +   F + + F   +P P P FF C F
Sbjct: 104 WSERMLEKFHMPNIFKEEVPNPPPDFFTCTF 134


>SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 982

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 126 WLFNLSRTFPLDHFFFXALPPPDPSFFFCVF 34
           W   +   F + + F   +P P P FF C F
Sbjct: 304 WSERMLEKFHMPNIFKEEVPNPPPDFFTCTF 334


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  PNSLKKHRRRRKDPVAAKPXRRSGPKEK 104
           PN+LK+ +RR  +    KP  RS  K +
Sbjct: 67  PNALKREKRRTTNSANRKPANRSPSKRE 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,856,466
Number of Sequences: 59808
Number of extensions: 245716
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)