Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0661
(363 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 69 9e-13
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 69 9e-13
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 68 2e-12
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 67 3e-12
At5g64950.1 68418.m08170 mitochondrial transcription termination... 29 0.93
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 28 1.6
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 28 2.1
At1g24706.1 68414.m03104 expressed protein 27 3.7
At4g36670.1 68417.m05203 mannitol transporter, putative similar ... 26 6.5
At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter c... 26 6.5
At1g48180.1 68414.m05378 expressed protein ; expression supporte... 26 6.5
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 26 8.6
At4g27630.1 68417.m03971 expressed protein 26 8.6
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin... 26 8.6
>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
Length = 108
Score = 68.9 bits (161), Expect = 9e-13
Identities = 29/54 (53%), Positives = 44/54 (81%)
Frame = +2
Query: 107 RDKLNNQVLXDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
++K+NN VL D+ TY+KL E P++KLITP+++S+RL++ GSLARRA+ +L K
Sbjct: 34 KEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAK 87
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRATKG 330
++ L KG I+ V H Q IYTRAT G
Sbjct: 79 RAIRELMAKGTIRMVSAHSSQQIYTRATHG 108
>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)
Length = 125
Score = 68.9 bits (161), Expect = 9e-13
Identities = 28/51 (54%), Positives = 43/51 (84%)
Frame = +2
Query: 107 RDKLNNQVLXDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDL 259
++K+NN VL D+ TY+KL E P++KLITP+++S+RL++ GSLAR+A+ DL
Sbjct: 50 KEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDL 100
>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
ribosomal protein S25, Lycopersicon esculentum,
PIR2:S40089
Length = 108
Score = 67.7 bits (158), Expect = 2e-12
Identities = 28/54 (51%), Positives = 44/54 (81%)
Frame = +2
Query: 107 RDKLNNQVLXDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
++K+NN VL D+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ +L K
Sbjct: 34 KEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87
Score = 30.3 bits (65), Expect = 0.40
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRAT 324
++ L KG+I+ V H Q IYTRAT
Sbjct: 79 RAIRELMAKGVIRMVAAHSSQQIYTRAT 106
>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
Length = 108
Score = 67.3 bits (157), Expect = 3e-12
Identities = 28/54 (51%), Positives = 44/54 (81%)
Frame = +2
Query: 107 RDKLNNQVLXDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
++K+NN VL D+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ +L K
Sbjct: 34 KEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRAT 324
++ L KGLI+ V H Q IYTRAT
Sbjct: 79 RAIRELMAKGLIRMVSAHSSQQIYTRAT 106
>At5g64950.1 68418.m08170 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 391
Score = 29.1 bits (62), Expect = 0.93
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 351 SLCDWIIALGRTRVDHLPMVLDYLFDETFFPKSMSALLAREPRTFNLSD 205
S C W++ + LP + YL +++LL R+PR FNLS+
Sbjct: 166 SRCGWLLLSRDPNLFLLPNI-SYLETCGIVGSQLASLLRRQPRIFNLSE 213
>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 436
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -1
Query: 180 YCGTSLYSFSY--VGLSXNTWLFNLSRTFPLDHFFFXALPPPDPSFFFC 40
+C LY+F +G TW F + + + + A+ P+P F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +2
Query: 119 NNQVLXDKPTYEKLYKEVPQYKLITPAVVSERLKVR 226
+++ + +KPT +K E L++PA +S+R+K++
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLK 280
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 117 NLSRTFPLDHFFFXALPPPDP 55
+L ++ P DHF LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582
>At4g36670.1 68417.m05203 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 493
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 192 VISLYCGTSLYSFSYVGLSXNTWLFNLSRTFPL 94
V+S+ S +F +GL TW+++ S FPL
Sbjct: 377 VLSIVAAYSFVAFFSIGLGPITWVYS-SEVFPL 408
>At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter
contains transmembrane domains; identical to
UDP-galactose/UDP-glucose transporter (GI:22651763)
[Arabidopsis thaliana] similar to UGTrel1 (GI:1669564)
[Rattus rattus]; identical to cDNA
UDP-galactose/UDP-glucose transporter GI:22651762
Length = 332
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 175 WDFLVQFLICGFIXQHLVVQLVTNF 101
WD L ++ ICG + Q+ + ++NF
Sbjct: 245 WDIL-KYCICGAVGQNFIFMTISNF 268
>At1g48180.1 68414.m05378 expressed protein ; expression supported
by MPSS
Length = 239
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 213 LSDTTAGVISLYCGTSLYSFSYVGL 139
L + + +YCGTS SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -1
Query: 201 TAGVISLY-CGTSLYSFSYVG 142
T G I LY CG + Y FS++G
Sbjct: 25 TPGKIGLYVCGITAYDFSHIG 45
>At4g27630.1 68417.m03971 expressed protein
Length = 348
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 308 ITCPWCWTTCLMRPFSL 258
I P CWTT L PF L
Sbjct: 4 ILSPTCWTTLLKHPFIL 20
>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
[Arabidopsis thaliana] GI:6491702; similar to myosin
GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
profiles: PF00063: myosin head (motor domain), PF00612:
IQ calmodulin-binding motif; identical to cDNA myosin
(ATM) GI:297068
Length = 1166
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 176 QYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNTMG 301
QYK I A V + +RG L RR D+G S +N +G
Sbjct: 907 QYKGIADASVVIQSAIRGWLVRRCSGDIGWLKSGGAKTNELG 948
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,190,873
Number of Sequences: 28952
Number of extensions: 162834
Number of successful extensions: 490
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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