Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0657
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    40   3e-04
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    28   0.90 
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.6  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   4.8  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   8.4  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +3

Query: 255 ELKTIVTSYAEPFSEEETREMLRDANVRGDGNVFYESF 368
           EL  ++TS  E  S+EE  +M+R+A+  GDG + YE F
Sbjct: 106 ELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +2

Query: 8   INSNYFFDTMAVLDAYNPLQNVSLRFNEDQLKEIGEWFENNAKPQLT---STDGDPIRAI 178
           I +NY F     L     L+     F +   ++ GE+F+N  K +LT    +D + +R +
Sbjct: 461 ILNNYIFSCPLFLVTPEELEEQYTDFFKKLKEKYGEFFQNLLKKELTGKPESDLEGLRLV 520

Query: 179 TVDKFVSFLNLK 214
            V    ++ NLK
Sbjct: 521 GVQLQATYENLK 532


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 374 FNKTFIKYISIATDICIT*HFTCLLF 297
           F  TF+    IA   CIT  F CL+F
Sbjct: 52  FLHTFLADCEIAKSTCITSVFNCLIF 77


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = +2

Query: 56  NPLQNVSLRFNEDQLKEIGEWFENNAKPQLTSTDGDPIRAITVD 187
           N  +N+S+   +D+++E+G+         +  +   P+   T+D
Sbjct: 147 NVSENISVNTEDDKVEEVGQKLNYTKITSIDQSQETPVHLSTID 190


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 41  VLDAYNPLQNVSLRFNEDQLKEIGEWFENNAKPQLTSTDGDPIRAITVD 187
           VL + NP QN+   +N++ +K   +  E    P L S       A+T D
Sbjct: 101 VLVSINPYQNLPEFYNDNLIKHFHKDPEAAKVPHLYSIASSCYHALTTD 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,464
Number of Sequences: 5004
Number of extensions: 33478
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)