Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0657
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 291 FSEEETREMLRDANVRGDGNVFYESFVESLFSVAPELYEI 410
           F+   T+++  +AN +G    FY    + + ++  E+Y+I
Sbjct: 537 FNVNATKQIKDEANKKGVSLRFYNVVYKLIDNIKKEIYDI 576


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 167 IRAITVDKFVSFLNLKKFSTQRKEVF*KLRTKNNC 271
           +R++ +DK    + L     +R E     R KNNC
Sbjct: 313 VRSLVLDKLARIVLLNFQEERRSEPVEPPRRKNNC 347


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 5   KINSNYFFDTMAVLDAYN 58
           +I  NYFFD+  + +A N
Sbjct: 164 EIYPNYFFDSSVIEEAQN 181


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 5   KINSNYFFDTMAVLDAYN 58
           +I  NYFFD+  + +A N
Sbjct: 164 EIYPNYFFDSSVIEEAQN 181


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 222 ENFLRFKKDTNLSTVIALIGSPSVLVS*G 136
           +  LR KK+  L    +  G P++L + G
Sbjct: 353 QGLLRVKKEEELQEAPSCGGGPTILTTPG 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,336
Number of Sequences: 438
Number of extensions: 2120
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)