Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0656
         (297 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   6.5  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    20   6.5  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    20   6.5  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    19   8.5  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -2

Query: 233 RCRKCSFLCV 204
           +C KC + CV
Sbjct: 260 QCNKCDYTCV 269


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -2

Query: 233 RCRKCSFLCV 204
           +C KC + CV
Sbjct: 18  QCNKCDYTCV 27


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 190 EMKQMTQRKLHFL 228
           + K+MT++ +HFL
Sbjct: 76  KQKEMTKKVIHFL 88


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 78  KITLVSYFVLDTS 40
           KIT   +F+LD S
Sbjct: 288 KITAADFFILDKS 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,029
Number of Sequences: 336
Number of extensions: 994
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5322850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)