Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0656
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    24   4.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   4.2  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    24   5.5  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    23   9.6  

>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 218 SFLCVICFISQLRLF--SS*RPQKLWNS 141
           +FLC+ CFI +  LF  S   P+ L+N+
Sbjct: 710 TFLCISCFIMRHHLFVWSVFSPKLLYNA 737


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 109  LPCVNC*FLI*NNPCFLLRPGYIYVFFFVNK 17
            LPCV C F    +    L PG++  F  V K
Sbjct: 2108 LPCVECFFKYKKDALHTLLPGFMRCFHKVAK 2138


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 25  RKKKHRCIQDEVRNKGYFILKI-SNSHKAV 111
           R  +H  +QDE+R++G  +  + S+ H  V
Sbjct: 490 RSHQHAYVQDEIRHRGDIVWSVLSHPHGKV 519


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 242 IRTRCRKCSFLCVICFISQLRLFSS*RPQKLWN 144
           ++T  R+ + LC++  I +L L  + RP+++ N
Sbjct: 291 VKTAEREAALLCILQDIIKLPLKDNVRPREIGN 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 968,771
Number of Sequences: 5004
Number of extensions: 15352
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)