Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0652
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    32   0.069
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    31   0.12 
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    30   0.28 
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    27   2.6  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   6.0  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   7.9  

>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 502 SNDPNVKGIPDFWYNIFRNVSMLSEMM 582
           +N P+ KGIP+FW     NV ++ EM+
Sbjct: 158 NNLPDPKGIPEFWLTCLHNVFLVGEMI 184


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 514 NVKGIPDFWYNIFRNVSMLSEMM 582
           + KGIP+FW    +NV  LSEM+
Sbjct: 160 DTKGIPEFWLTAMKNVLSLSEMI 182


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = -1

Query: 578 ISLSIETFLNMLYQKSGIPFTLGSLE 501
           IS ++  +LN+L +KSG+PF+LG ++
Sbjct: 292 ISTALVGYLNILVKKSGMPFSLGVVQ 317


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -2

Query: 511 DHWRLDSLVILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 368
           D + + ++ ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 663 DSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 635 LHFNILQAF*KLVHHVSCIISLSIETFLNMLYQKSGI 525
           L   IL A+    + V  I+S SIETFL  L +++G+
Sbjct: 226 LSHGILSAYEPPNYAVPSILSSSIETFLRTLKRETGL 262


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 126  HLLKSGVTRNEMIAAITNRLHAEAMASLP 212
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 689 HLEQSRNSQSEAYGVFMHLHFNILQAF*KL 600
           H E  +N   E YGV +H  +  L+ F KL
Sbjct: 327 HFEHFKNESGEIYGVLLH-RWCFLEIFIKL 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,332
Number of Sequences: 5004
Number of extensions: 53239
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)