Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0652
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 29   4.8  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   6.3  
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    28   8.4  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                28   8.4  
SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    28   8.4  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
 Frame = +2

Query: 257 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPW----RDDTEE 424
           E   +E KFY EVHA               R  I +G  EP D+EC  P      D+ EE
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEECRWPSDAEDEDEAEE 200

Query: 425 EELARAVQNAAIT-EGEEK---KDDKAIEPPMIPM-*RVSQTFGTTYSGMSQCSAK*CKK 589
           +E   A + + ++ E EEK    D++ IE   +P   +    F  T     +  ++  ++
Sbjct: 201 KEEKEATEVSKLSGEVEEKVKIDDEEKIETEQLPEDTKGIPEFWLTAMKNVELLSEMIQE 260

Query: 590 HDEPISKML 616
           HDEPI K L
Sbjct: 261 HDEPILKHL 269



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 514 NVKGIPDFWYNIFRNVSMLSEMMQE 588
           + KGIP+FW    +NV +LSEM+QE
Sbjct: 236 DTKGIPEFWLTAMKNVELLSEMIQE 260


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 210 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 112
           V +PS +HE D   PL F +GS +  T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 368 TYEPNDDECLNPWRDDTEEEEL 433
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 371 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 466
           +  N D+C+N   +  T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 430 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 290
           LFF   +T    +F +  FI   +     F K +   F++ F CMYF
Sbjct: 13  LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56


>SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 419 EEEELARAVQNAAITEGEEKKDDKAIEPPMIPM*RVSQTFGTTYSGMSQCSA 574
           E+EE+ RAV+ +   E E++K +KA E   +     ++T  +  S  S  +A
Sbjct: 52  EQEEMERAVKESIRVEKEKRKAEKAAEAAAVGSSPAAKTPSSASSPSSATAA 103


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 449 NAAITEGEEKKDDKAI-EPPMIPM*RVSQTFGTTYSGMSQCSAK*CKKHDEPISKMLAR 622
           NAA+ E  +  + KA+ +P  +P  R S+T  T +  ++  S K     D PI K+  R
Sbjct: 480 NAALVELSKDPEPKAVVDPTGVPPRRKSRT-STEWIKVTSTSTKQSSNADRPIKKLWDR 537


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,940,991
Number of Sequences: 59808
Number of extensions: 413113
Number of successful extensions: 1051
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)