SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0652
         (698 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M86667-1|AAC37544.1|  391|Homo sapiens NAP protein.                    68   4e-11
BT007023-1|AAP35669.1|  391|Homo sapiens nucleosome assembly pro...    68   4e-11
BC002387-1|AAH02387.1|  391|Homo sapiens nucleosome assembly pro...    68   4e-11
U77456-1|AAC50870.1|  375|Homo sapiens nucleosome assembly prote...    48   3e-05
BC022090-1|AAH22090.1|  375|Homo sapiens nucleosome assembly pro...    48   3e-05
D50370-1|BAA08904.1|  506|Homo sapiens nucleosome assembly prote...    34   0.42 
BC034954-1|AAH34954.1|  506|Homo sapiens nucleosome assembly pro...    34   0.42 
AL009173-1|CAA15661.1|  506|Homo sapiens nucleosome assembly pro...    34   0.42 
AK223621-1|BAD97341.1|  506|Homo sapiens nucleosome assembly pro...    34   0.42 
CR457095-1|CAG33376.1|  460|Homo sapiens NAP1L2 protein.               32   2.3  
BC026325-1|AAH26325.1|  460|Homo sapiens nucleosome assembly pro...    32   2.3  
AF136178-1|AAP97268.1|  460|Homo sapiens nucleosome assembly pro...    32   2.3  
AB027013-1|BAA84706.1|  460|Homo sapiens Nucleosome Assembly Pro...    32   2.3  

>M86667-1|AAC37544.1|  391|Homo sapiens NAP protein.
          Length = 391

 Score = 67.7 bits (158), Expect = 4e-11
 Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
 Frame = +2

Query: 239 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
           L+N   +   IEAKFY EVH                R  I+N  YEP ++EC   W+ D 
Sbjct: 81  LKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEEC--EWKPD- 137

Query: 419 EEEELARAVQNAAITEGEEKKDDKAIEPPMIPM*RVSQTFGTTYSGMSQCSAK*CKKHDE 598
           EE+E++  ++  A  E +EKKD++  +P  IP     + + T +  +   S    ++HDE
Sbjct: 138 EEDEISEELKEKAKIE-DEKKDEEKEDPKGIP-----EFWLTVFKNVDLLSDM-VQEHDE 190

Query: 599 PISKML--ARY*SANA*RPHKLHSGNFYFAPNEYF 697
           PI K L   +   ++A +P       F+F PNEYF
Sbjct: 191 PILKHLKDIKVKFSDAGQPMSFVL-EFHFEPNEYF 224



 Score = 39.9 bits (89), Expect = 0.009
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQE 588
           KGIP+FW  +F+NV +LS+M+QE
Sbjct: 165 KGIPEFWLTVFKNVDLLSDMVQE 187


>BT007023-1|AAP35669.1|  391|Homo sapiens nucleosome assembly
           protein 1-like 2 protein.
          Length = 391

 Score = 67.7 bits (158), Expect = 4e-11
 Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
 Frame = +2

Query: 239 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
           L+N   +   IEAKFY EVH                R  I+N  YEP ++EC   W+ D 
Sbjct: 81  LKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEEC--EWKPD- 137

Query: 419 EEEELARAVQNAAITEGEEKKDDKAIEPPMIPM*RVSQTFGTTYSGMSQCSAK*CKKHDE 598
           EE+E++  ++  A  E +EKKD++  +P  IP     + + T +  +   S    ++HDE
Sbjct: 138 EEDEISEELKEKAKIE-DEKKDEEKEDPKGIP-----EFWLTVFKNVDLLSDM-VQEHDE 190

Query: 599 PISKML--ARY*SANA*RPHKLHSGNFYFAPNEYF 697
           PI K L   +   ++A +P       F+F PNEYF
Sbjct: 191 PILKHLKDIKVKFSDAGQPMSFVL-EFHFEPNEYF 224



 Score = 39.9 bits (89), Expect = 0.009
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQE 588
           KGIP+FW  +F+NV +LS+M+QE
Sbjct: 165 KGIPEFWLTVFKNVDLLSDMVQE 187


>BC002387-1|AAH02387.1|  391|Homo sapiens nucleosome assembly
           protein 1-like 1 protein.
          Length = 391

 Score = 67.7 bits (158), Expect = 4e-11
 Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
 Frame = +2

Query: 239 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
           L+N   +   IEAKFY EVH                R  I+N  YEP ++EC   W+ D 
Sbjct: 81  LKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEEC--EWKPD- 137

Query: 419 EEEELARAVQNAAITEGEEKKDDKAIEPPMIPM*RVSQTFGTTYSGMSQCSAK*CKKHDE 598
           EE+E++  ++  A  E +EKKD++  +P  IP     + + T +  +   S    ++HDE
Sbjct: 138 EEDEISEELKEKAKIE-DEKKDEEKEDPKGIP-----EFWLTVFKNVDLLSDM-VQEHDE 190

Query: 599 PISKML--ARY*SANA*RPHKLHSGNFYFAPNEYF 697
           PI K L   +   ++A +P       F+F PNEYF
Sbjct: 191 PILKHLKDIKVKFSDAGQPMSFVL-EFHFEPNEYF 224



 Score = 39.9 bits (89), Expect = 0.009
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQE 588
           KGIP+FW  +F+NV +LS+M+QE
Sbjct: 165 KGIPEFWLTVFKNVDLLSDMVQE 187


>U77456-1|AAC50870.1|  375|Homo sapiens nucleosome assembly protein
           2 protein.
          Length = 375

 Score = 48.0 bits (109), Expect = 3e-05
 Identities = 18/29 (62%), Positives = 25/29 (86%)
 Frame = +1

Query: 502 SNDPNVKGIPDFWYNIFRNVSMLSEMMQE 588
           + +P+ KGIP+FW+ IFRNV MLSE++QE
Sbjct: 151 AEEPDPKGIPEFWFTIFRNVDMLSELVQE 179



 Score = 43.2 bits (97), Expect = 0.001
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
 Frame = +2

Query: 269 IEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEE-LARAV 445
           IEAKFY EVH                R   + G  EP D E  + W  + EEEE LA  +
Sbjct: 80  IEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAE--SEWHSENEEEEKLAGDM 137

Query: 446 QNAAITEGEEKKDDKAIEPPMIPM*RVSQTFGTTYSGMSQCSAK*CKKHDEPISKML--A 619
           ++  +   +     +  +P  IP     + + T +  +   S +  +++DEPI K L   
Sbjct: 138 KSKVVVTEKAAATAEEPDPKGIP-----EFWFTIFRNVDMLS-ELVQEYDEPILKHLQDI 191

Query: 620 RY*SANA*RPHKLHSGNFYFAPNEYF 697
           +   ++  +P       F+F PN+YF
Sbjct: 192 KVKFSDPGQPMSFVL-EFHFEPNDYF 216


>BC022090-1|AAH22090.1|  375|Homo sapiens nucleosome assembly
           protein 1-like 4 protein.
          Length = 375

 Score = 48.0 bits (109), Expect = 3e-05
 Identities = 18/29 (62%), Positives = 25/29 (86%)
 Frame = +1

Query: 502 SNDPNVKGIPDFWYNIFRNVSMLSEMMQE 588
           + +P+ KGIP+FW+ IFRNV MLSE++QE
Sbjct: 151 AEEPDPKGIPEFWFTIFRNVDMLSELVQE 179



 Score = 43.2 bits (97), Expect = 0.001
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
 Frame = +2

Query: 269 IEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEE-LARAV 445
           IEAKFY EVH                R   + G  EP D E  + W  + EEEE LA  +
Sbjct: 80  IEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAE--SEWHSENEEEEKLAGDM 137

Query: 446 QNAAITEGEEKKDDKAIEPPMIPM*RVSQTFGTTYSGMSQCSAK*CKKHDEPISKML--A 619
           ++  +   +     +  +P  IP     + + T +  +   S +  +++DEPI K L   
Sbjct: 138 KSKVVVTEKAAATAEEPDPKGIP-----EFWFTIFRNVDMLS-ELVQEYDEPILKHLQDI 191

Query: 620 RY*SANA*RPHKLHSGNFYFAPNEYF 697
           +   ++  +P       F+F PN+YF
Sbjct: 192 KVKFSDPGQPMSFVL-EFHFEPNDYF 216


>D50370-1|BAA08904.1|  506|Homo sapiens nucleosome assembly protein
           protein.
          Length = 506

 Score = 34.3 bits (75), Expect = 0.42
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
 Frame = +2

Query: 239 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
           L N  +E   ++  F   +H                R  I+N  YEP ++EC   W  + 
Sbjct: 111 LRNIQDECDKVDTLFLKAIHDLERKYAELNKPLYDRRFQIINAEYEPTEEEC--EWNSED 168

Query: 419 EEEELARAVQNAAIT-----EGEEKKDDK 490
           EE      VQ+   +     EGEE+++ K
Sbjct: 169 EEFSSDEEVQDNTPSEMPPLEGEEEENPK 197



 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 487 QGYRASNDPNVKGIPDFWYNIFRNVSMLSEMMQE 588
           +G     DP  KGIPD+W  + +NV  L  M+Q+
Sbjct: 300 KGKPKREDP--KGIPDYWLIVLKNVDKLGPMIQK 331


>BC034954-1|AAH34954.1|  506|Homo sapiens nucleosome assembly
           protein 1-like 3 protein.
          Length = 506

 Score = 34.3 bits (75), Expect = 0.42
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
 Frame = +2

Query: 239 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
           L N  +E   ++  F   +H                R  I+N  YEP ++EC   W  + 
Sbjct: 111 LRNIQDECDKVDTLFLKAIHDLERKYAELNKPLYDRRFQIINAEYEPTEEEC--EWNSED 168

Query: 419 EEEELARAVQNAAIT-----EGEEKKDDK 490
           EE      VQ+   +     EGEE+++ K
Sbjct: 169 EEFSSDEEVQDNTPSEMPPLEGEEEENPK 197



 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 487 QGYRASNDPNVKGIPDFWYNIFRNVSMLSEMMQE 588
           +G     DP  KGIPD+W  + +NV  L  M+Q+
Sbjct: 300 KGKPKREDP--KGIPDYWLIVLKNVDKLGPMIQK 331


>AL009173-1|CAA15661.1|  506|Homo sapiens nucleosome assembly
           protein 1-like 3 protein.
          Length = 506

 Score = 34.3 bits (75), Expect = 0.42
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
 Frame = +2

Query: 239 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
           L N  +E   ++  F   +H                R  I+N  YEP ++EC   W  + 
Sbjct: 111 LRNIQDECDKVDTLFLKAIHDLERKYAELNKPLYDRRFQIINAEYEPTEEEC--EWNSED 168

Query: 419 EEEELARAVQNAAIT-----EGEEKKDDK 490
           EE      VQ+   +     EGEE+++ K
Sbjct: 169 EEFSSDEEVQDNTPSEMPPLEGEEEENPK 197



 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 487 QGYRASNDPNVKGIPDFWYNIFRNVSMLSEMMQE 588
           +G     DP  KGIPD+W  + +NV  L  M+Q+
Sbjct: 300 KGKPKREDP--KGIPDYWLIVLKNVDKLGPMIQK 331


>AK223621-1|BAD97341.1|  506|Homo sapiens nucleosome assembly
           protein 1-like 3 variant protein.
          Length = 506

 Score = 34.3 bits (75), Expect = 0.42
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
 Frame = +2

Query: 239 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
           L N  +E   ++  F   +H                R  I+N  YEP ++EC   W  + 
Sbjct: 111 LRNIQDECDKVDTLFLKAIHDLERKYAELNKPLYDRRFQIINAEYEPTEEEC--EWNSED 168

Query: 419 EEEELARAVQNAAIT-----EGEEKKDDK 490
           EE      VQ+   +     EGEE+++ K
Sbjct: 169 EEFSSDEEVQDNTPSEMPPLEGEEEENPK 197



 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 487 QGYRASNDPNVKGIPDFWYNIFRNVSMLSEMMQE 588
           +G     DP  KGIPD+W  + +NV  L  M+Q+
Sbjct: 300 KGKPKREDP--KGIPDYWLIVLKNVDKLGPMIQK 331


>CR457095-1|CAG33376.1|  460|Homo sapiens NAP1L2 protein.
          Length = 460

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 266 DIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDEC-LNPWRDDTEEEEL 433
           ++E+KF  E H                R  I+N  YEP ++EC      +D ++EE+
Sbjct: 124 NLESKFLREFHDIERKFAEMYQPLLEKRRQIINAIYEPTEEECEYKSDSEDCDDEEM 180



 Score = 31.9 bits (69), Expect = 2.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 490 GYRASNDPNVKGIPDFWYNIFRNVSMLSEMMQE 588
           G     + + KGIPDFW  + +NV  L+ ++++
Sbjct: 228 GEENKEEEDPKGIPDFWLTVLKNVDTLTPLIKK 260



 Score = 30.3 bits (65), Expect = 6.9
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +2

Query: 371 YEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMIPM*RVSQTFGTTY 550
           Y   DD   + + D   EEE     ++     GEE K+++  +P  IP       F  T 
Sbjct: 196 YVDEDDGYEDYYYDYAVEEEEEEEEEDDIEATGEENKEEE--DPKGIP------DFWLTV 247

Query: 551 SGMSQCSAK*CKKHDEPISKMLA--RY*SANA*RPHKLHSGNFYFAPNEYF 697
                      KK+DEPI K+L   +   ++   P    +  F+F PNEYF
Sbjct: 248 LKNVDTLTPLIKKYDEPILKLLTDIKVKLSDPGEPLSF-TLEFHFKPNEYF 297


>BC026325-1|AAH26325.1|  460|Homo sapiens nucleosome assembly
           protein 1-like 2 protein.
          Length = 460

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 266 DIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDEC-LNPWRDDTEEEEL 433
           ++E+KF  E H                R  I+N  YEP ++EC      +D ++EE+
Sbjct: 124 NLESKFLREFHDIERKFAEMYQPLLEKRRQIINAIYEPTEEECEYKSDSEDCDDEEM 180



 Score = 31.9 bits (69), Expect = 2.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 490 GYRASNDPNVKGIPDFWYNIFRNVSMLSEMMQE 588
           G     + + KGIPDFW  + +NV  L+ ++++
Sbjct: 228 GEENKEEEDPKGIPDFWLTVLKNVDTLTPLIKK 260



 Score = 30.3 bits (65), Expect = 6.9
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +2

Query: 371 YEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMIPM*RVSQTFGTTY 550
           Y   DD   + + D   EEE     ++     GEE K+++  +P  IP       F  T 
Sbjct: 196 YVDEDDGYEDYYYDYAVEEEEEEEEEDDIEATGEENKEEE--DPKGIP------DFWLTV 247

Query: 551 SGMSQCSAK*CKKHDEPISKMLA--RY*SANA*RPHKLHSGNFYFAPNEYF 697
                      KK+DEPI K+L   +   ++   P    +  F+F PNEYF
Sbjct: 248 LKNVDTLTPLIKKYDEPILKLLTDIKVKLSDPGEPLSF-TLEFHFKPNEYF 297


>AF136178-1|AAP97268.1|  460|Homo sapiens nucleosome assembly
           protein Bpx protein.
          Length = 460

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 266 DIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDEC-LNPWRDDTEEEEL 433
           ++E+KF  E H                R  I+N  YEP ++EC      +D ++EE+
Sbjct: 124 NLESKFLREFHDIERKFAEMYQPLLEKRRQIINAIYEPTEEECEYKSDSEDCDDEEM 180



 Score = 31.9 bits (69), Expect = 2.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 490 GYRASNDPNVKGIPDFWYNIFRNVSMLSEMMQE 588
           G     + + KGIPDFW  + +NV  L+ ++++
Sbjct: 228 GEENKEEEDPKGIPDFWLTVLKNVDTLTPLIKK 260



 Score = 30.3 bits (65), Expect = 6.9
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +2

Query: 371 YEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMIPM*RVSQTFGTTY 550
           Y   DD   + + D   EEE     ++     GEE K+++  +P  IP       F  T 
Sbjct: 196 YVDEDDGYEDYYYDYAVEEEEEEEEEDDIEATGEENKEEE--DPKGIP------DFWLTV 247

Query: 551 SGMSQCSAK*CKKHDEPISKMLA--RY*SANA*RPHKLHSGNFYFAPNEYF 697
                      KK+DEPI K+L   +   ++   P    +  F+F PNEYF
Sbjct: 248 LKNVDTLTPLIKKYDEPILKLLTDIKVKLSDPGEPLSF-TLEFHFKPNEYF 297


>AB027013-1|BAA84706.1|  460|Homo sapiens Nucleosome Assembly
           Protein 1-like 2 protein.
          Length = 460

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 266 DIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDEC-LNPWRDDTEEEEL 433
           ++E+KF  E H                R  I+N  YEP ++EC      +D ++EE+
Sbjct: 124 NLESKFLREFHDIERKFAEMYQPLLEKRRQIINAIYEPTEEECEYKSDSEDCDDEEM 180



 Score = 31.9 bits (69), Expect = 2.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 490 GYRASNDPNVKGIPDFWYNIFRNVSMLSEMMQE 588
           G     + + KGIPDFW  + +NV  L+ ++++
Sbjct: 228 GEENKEEEDPKGIPDFWLTVLKNVDTLTPLIKK 260



 Score = 30.3 bits (65), Expect = 6.9
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +2

Query: 371 YEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMIPM*RVSQTFGTTY 550
           Y   DD   + + D   EEE     ++     GEE K+++  +P  IP       F  T 
Sbjct: 196 YVDEDDGYEDYYYDYAVEEEEEEEEEDDIEATGEENKEEE--DPKGIP------DFWLTV 247

Query: 551 SGMSQCSAK*CKKHDEPISKMLA--RY*SANA*RPHKLHSGNFYFAPNEYF 697
                      KK+DEPI K+L   +   ++   P    +  F+F PNEYF
Sbjct: 248 LKNVDTLTPLIKKYDEPILKLLTDIKVKLSDPGEPLSF-TLEFHFKPNEYF 297


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,119,443
Number of Sequences: 237096
Number of extensions: 1991244
Number of successful extensions: 4870
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4845
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -