Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0651
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   1.5  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   3.5  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.1  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   8.0  

>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 518 WRHLLGAITDNTPSEDSRDSTDSAVQPSGK 429
           W H+ G IT+N  ++D+++   S V    K
Sbjct: 128 WSHIPGMITENQTNDDAKEVNGSDVDEKSK 157


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +1

Query: 376 EKKDQHGYISRQFTRRYALPXGCTAESVESRLSSDGVLSVIAPRRCRQQWRVNXKIPI 549
           EK +   YI  QF   +     C   ++E+R+    V  +I   +  ++WR    IP+
Sbjct: 818 EKSEHFIYIENQF---FVTSTTCEGTTIENRVGDALVERIIRAHKNNEKWRGVIMIPL 872


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 135 STFRLGADSGRFSQCCSRPPCEQR-ILPPVAFTLLP 239
           STF LG+ + R  +  + PP E+  +L  V F+L P
Sbjct: 314 STFTLGSKAPRIDRVRTHPPVERDVVLMDVDFSLTP 349


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 332 LKRRTATSWLKANTRRRKISMVTYRVNSLVATLCR 436
           LKR    S+  ANT  RK ++V       +AT C+
Sbjct: 126 LKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCK 160


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 477 RWCVVCNRTQEVPPAVE 527
           R+C++CN   ++ PA++
Sbjct: 152 RFCIICNYINKISPAIQ 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,677
Number of Sequences: 5004
Number of extensions: 42264
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)