Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0651
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0227 + 1933247-1933699 34 0.094
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 33 0.16
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.50
12_02_0136 + 14109557-14109661,14109742-14109804 29 2.7
07_01_1127 + 10456895-10457388,10457488-10458112 29 2.7
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 3.5
09_03_0036 + 11772940-11773171,11774995-11775104 29 3.5
04_01_0252 - 3329712-3331061 29 3.5
03_01_0491 + 3720842-3720958,3721904-3723109 28 4.7
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 27 8.2
>01_01_0227 + 1933247-1933699
Length = 150
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 358 VEGKHEEKKDQHGYISRQFTRRYALPXGCTAESVESRLSSDGVLSVIAPR 507
V+GK++E+ S +F RR+ LP G + V + + +GVL+V P+
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPK 135
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Frame = +1
Query: 262 IKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ------HGYISRQ---- 411
+ D + ++ D+ + EE+ V D +V+ G+H++++ + G+ +
Sbjct: 137 VMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSS 196
Query: 412 FTRRYALPXGCTAESVESRLSSDGVLSVIAPR 507
+ R ALP C V + L +GVL V P+
Sbjct: 197 YDMRLALPDECDKSKVRAEL-KNGVLLVTVPK 227
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 373 RVCLQPRCSRPPF*QRFLPGRNAGR 299
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>12_02_0136 + 14109557-14109661,14109742-14109804
Length = 55
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 189 PPCEQRILPPVAFTLLPRLETLLQHQK 269
PPC +R+LPP+A LLP + +K
Sbjct: 8 PPCRRRLLPPIAH-LLPHARERKEEEK 33
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 373 RVCLQPRCSRPPF*QRFLPGRNAGR 299
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 320 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 415
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 318 GRNLC*NGGRLHRG*RQTRGEERSAWLH 401
G+NL G+ H G R+ RG+ER LH
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLH 48
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 373 RVCLQPRCSRPPF*QRFLPGRNAGR 299
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 201 AHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 103
A G GC K+F S+ +A+ H A +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 265 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGY 399
+SDKDK N+D + A E + V+ E K +EK + H Y
Sbjct: 502 ESDKDKIMCNVDEKDIA-EHLRVRLKKEQEEKEHKKKEKAEAHLY 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,493
Number of Sequences: 37544
Number of extensions: 339019
Number of successful extensions: 867
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -