Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0651
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.41 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.41 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = -2

Query: 571 APRVRFGRSESXRSPSTAGGTSWVRLQTTHHLKTAGTPQIQPYSXPAKRSDE 416
           APRV+   S         G  S V LQ  + L+    PQI P S     SD+
Sbjct: 58  APRVKKTASAGPIFGVIGGSYSSVSLQVANLLRLFHIPQISPASTAKALSDK 109


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = -2

Query: 571 APRVRFGRSESXRSPSTAGGTSWVRLQTTHHLKTAGTPQIQPYSXPAKRSDE 416
           APRV+   S         G  S V LQ  + L+    PQI P S     SD+
Sbjct: 148 APRVKKTASAGPIFGVIGGSYSSVSLQVANLLRLFHIPQISPASTAKALSDK 199


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 571 APRVRFGRSESXRSPSTAGGTSWVRLQTTHHLKTAG 464
           A ++R   S+     S+    SW RL + H L   G
Sbjct: 66  ALKLRIRCSDVHHFESSFNAQSWQRLTSLHELHVHG 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,057
Number of Sequences: 438
Number of extensions: 3102
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)