Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0651
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    40   0.001
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    34   0.060
At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock pro...    30   1.3  
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ...    29   1.7  
At1g78910.1 68414.m09199 pseudouridine synthase family protein l...    29   1.7  
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi...    28   3.9  
At5g44290.1 68418.m05421 protein kinase family protein contains ...    27   9.0  

>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
 Frame = +1

Query: 298 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPXGCTAE 453
           D+     EE+ V+  DG I+ + G+    +EEK D+   + R   +FTRR+ LP     E
Sbjct: 66  DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKME 125

Query: 454 SVESRLSSDGVLSVIAPR 507
            +++ +  +GVLSV  P+
Sbjct: 126 EIKASM-ENGVLSVTVPK 142


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
 Frame = +1

Query: 298 DVQHFAPEEISVKTA-DGYIVVEG-KHEEKKDQHGYISR------QFTRRYALPXGCTAE 453
           D+     EE+ V+   D  + + G +H EK+D++    R      QFTRR+ LP     +
Sbjct: 62  DLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMD 121

Query: 454 SVESRLSSDGVLSVIAPR 507
            V++ +  +GVL+V  P+
Sbjct: 122 QVKAAM-ENGVLTVTVPK 138


>At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock
           protein (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family: identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 134

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = +1

Query: 277 DKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGCTAES 456
           D    ++D+     EEI V+  D   ++               + F R++ LP       
Sbjct: 35  DSHTFSVDLPGLRKEEIKVEIEDSIYLIIRTEATPMSPPDQPLKTFKRKFRLPESIDMIG 94

Query: 457 VESRLSSDGVLSVIAPRR 510
           + +    DGVL+VI P+R
Sbjct: 95  ISAGYE-DGVLTVIVPKR 111


>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 435

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 553 GRSESXRSPSTAGGTSWVRLQTTHHLKTAGTPQIQPYSXPAKR 425
           G S S ++PS A  TSW    +T H+   GT    P   P  R
Sbjct: 238 GGSFSPKAPSQASSTSW---SSTRHMNGTGTAPFIPSMFPHSR 277


>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 478

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -2

Query: 463 TPQIQPYSXPAKRSDE*IDAICNHADLSSPRVCLQPR--CSRPPF*QRFLPGRNAGRPG 293
           T  I+ YS  A      I    N A L  P+    PR   S PPF    LPG+NAG  G
Sbjct: 14  TVLIRRYSRVAPPPSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADG 72


>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 991

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 484 HHLKTAGTPQIQPYSXPAKRSDE*IDAICNHADLSSPRVCLQPRCSRP 341
           HHL  +   ++ P S P   S      +  H   SS      PRCS+P
Sbjct: 26  HHLALSSKARVFPLSLPCNFSSRVSFKLQLHCAASSSSSVSPPRCSKP 73


>At5g44290.1 68418.m05421 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 383 KISMVTYRVNSLVATLCRXAVRLNLWSPGCL 475
           ++  + YR   L+   C   V ++LWS GC+
Sbjct: 297 RVVTLWYRPPELLLGACHYGVGVDLWSTGCI 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,176,072
Number of Sequences: 28952
Number of extensions: 244659
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)