Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0649
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 29 0.52
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 26 4.8
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 26 4.8
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 26 4.8
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 25 6.3
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 6.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.3
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 8.4
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 8.4
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 8.4
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 478 RRCQGNPGDVLGQSLHERYTSIRVSLLMHVHRFTYRYCSADVDYLQTFGQFARRIR 311
+RC G D L+ + +S +SL + ++ + + D DY+Q G +R+R
Sbjct: 415 KRCFGKTNDGSNPCLYHKESSA-ISLFLRLYAIAFS--NTDADYIQDSGPLFKRVR 467
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 474 VARETLVMFSAKAFTKDTPVFEFLCSCMSTVL 379
V+R+ ++ + + T+DT E LCS ST+L
Sbjct: 297 VSRQDYLLGNEQDVTEDTERLENLCSFQSTIL 328
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 304 PGHLVTSLKQRV-DYPFARELWCAKVSGTRRARGTHAPTSPRTPRRKA 164
P HLV + V Y A WC ++ RR G A + T RKA
Sbjct: 425 PEHLVKRKSRLVRQYSLA---WCCLINAIRRTEGVKAARAIFTKARKA 469
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 290 HEVTWVTPYPPSELAKGLKIVDVSATVSISKTVDMHEQRNSNTG 421
HE W PP E++K LKI+ + ISK D + +N ++G
Sbjct: 113 HESYWE---PPLEISKDLKILRLPIRKQISK--DSSQSQNVDSG 151
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 197 RVRTTCSACSRYLRAPQLPRKGIVDALLEAGHEVTWVT 310
R + C A Y APQLP +VD L +A + ++
Sbjct: 18 RSQVWCRANLPYPPAPQLPIPAVVDILTKASQALPQIS 55
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 220 RRARGTHAPTSPRTPRRKAV-RDTS*LSEQFQC 125
RR R + PTS R KAV +D + + FQC
Sbjct: 240 RRGRAPNNPTSDSISRSKAVPKDRINMYQPFQC 272
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 6.3
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = -2
Query: 495 SPAVEPGVARETLVMFSAKAFTKDTPVFEFLCSCMSTVLLIDTVALTSTIFRPLASSLGG 316
+P V + + S+ A TP+ ST + TV TST P+ SS
Sbjct: 1006 TPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTVVNTST---PITSSTVV 1062
Query: 315 YGVTQVTS*PASSNASTI 262
T +TS A + ++ I
Sbjct: 1063 NSSTPITSSTALNTSTPI 1080
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 404 RNSNTGVSFVKALAENITRVSLATPGSTAGDRPGEYDAVITETFFND 544
+NSNT + N+ + P T+GD P Y +I + +D
Sbjct: 526 KNSNTTENLNGINESNMPMLQNGLPLRTSGDHPSNYSNLIENSSTSD 572
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 8.4
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = -1
Query: 436 LHERYTSIRVSLLMHVHRFTYRYCSAD 356
+ +++ SL++H+H+F +R+ D
Sbjct: 57 IEHKFSKEEPSLILHIHKFHFRFEQQD 83
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 218 ACSRYLRAPQLPRKGIVDALLEAGHEVTWVTPYPPSE 328
AC+ + + K + A+++ E W+ P PP+E
Sbjct: 1716 ACTLGIIESPVGIKSVERAIIDKAWEEGWIVPRPPAE 1752
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,312
Number of Sequences: 5004
Number of extensions: 43789
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -