Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0649
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0164 - 13480939-13481340,13481507-13481770,13482929-134831... 31 0.53
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827... 31 0.70
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293... 29 2.8
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 29 3.7
11_06_0254 - 21721667-21721718,21722025-21722647 28 4.9
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 28 6.5
07_03_1620 - 28180020-28180862 28 6.5
10_08_0952 - 21770449-21770718,21771032-21771277,21771677-217719... 27 8.6
07_03_1310 - 25673140-25673418,25673837-25674082,25674189-256744... 27 8.6
07_03_1257 - 25241194-25242018 27 8.6
03_02_0668 - 10290541-10290644,10290777-10290911,10291812-102919... 27 8.6
>08_02_0164 -
13480939-13481340,13481507-13481770,13482929-13483107,
13483453-13483462
Length = 284
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 182 AW*RRRVRTTCSACSRYLRAPQLPRKGIVDALLEAGHEVTWVT-PYPPSELAKGL 343
AW R ++ S C+R L+A P ++DA+ VTW + Y L KGL
Sbjct: 90 AW--RLIQFPDSLCARLLKAKYFPNSELIDAVFLGDSSVTWKSLEYGLQLLKKGL 142
>02_05_0684 - 30880527-30880753,30881952-30882124,30882687-30882754,
30882860-30882973,30883281-30883438,30883516-30883654,
30883851-30883907,30884064-30884140,30884324-30884462,
30884590-30884668,30885047-30885174,30885269-30885352,
30886072-30886191,30886274-30886375,30886470-30886617,
30887404-30887749,30887851-30887968,30888309-30888370,
30888798-30888947,30889049-30889169,30889269-30889319,
30889427-30889567
Length = 933
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +1
Query: 238 RTTTPSQRDSRRVA*GWSRGDLGDSVSSERTGQRSEDSRRQRYSIYK*NGGHA 396
RT+ S D R S G + S S T RS DSR +RY NGG++
Sbjct: 863 RTSGQSGEDWRSAFDSASNGSVDRSSSHNETRSRSADSRGKRYENGDVNGGNS 915
>08_02_1047 -
23927822-23928112,23928736-23928981,23929119-23929395,
23929522-23929799,23931147-23931572
Length = 505
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +2
Query: 263 IVDALLEAGHEVTWVTPYPPSELAK---GLKIVDVSATVS-ISKTVDMHEQRNSNTGVSF 430
++ A+ AG VTWVT K GLK ++ + D+HEQ S+ G
Sbjct: 371 LIRAVRGAGQIVTWVTDPMHGNTMKAPCGLKTRSFDRILAEVRAFFDVHEQEGSHPGGVH 430
Query: 431 VKALAENIT 457
++ +N+T
Sbjct: 431 LEMTGQNVT 439
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 263 IVDALLEAGHEVTWVTPYPPSELAK---GLKIVDVSATVS-ISKTVDMHEQRNSNTGVSF 430
++ A+ AG VTW+T K GLK + ++ + D+H+Q S+ G
Sbjct: 424 LIRAVRHAGQIVTWITDPMHGNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGVH 483
Query: 431 VKALAENIT 457
++ +N+T
Sbjct: 484 LEMTGQNVT 492
>11_06_0254 - 21721667-21721718,21722025-21722647
Length = 224
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 227 RYLRAPQLPRKGIVDALLEAGHEVTWVTPYPPSEL 331
+ LRA LP++ I DAL +AGH +PPS L
Sbjct: 172 KQLRAG-LPQRTIFDALHDAGHSFGVYYQFPPSVL 205
>08_02_0076 +
11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 403 EKLEYWCIFRE-GFGREHHQGFP 468
+K ++WC+F+E FG E+++G P
Sbjct: 424 KKDDFWCLFKECVFGHENYKGEP 446
>07_03_1620 - 28180020-28180862
Length = 280
Score = 27.9 bits (59), Expect = 6.5
Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 5/107 (4%)
Frame = -1
Query: 565 CPVTSFGIVEERFRDDRVVFPWTIACCRARRCQGNPGDV--LGQSLHERYTSIRVSLLMH 392
CP G R RD R ++C R + PG V L RY L +H
Sbjct: 70 CPYAHKG-ERARRRDTRRFAYAAVSCPDYRPREAAPGAVPSCAHGLRCRYAHGVFELWLH 128
Query: 391 VHRFTYRYCSADV---DYLQTFGQFARRIRSHPGHLVTSLKQRVDYP 260
RF R CSA + F A +R P + +++ + P
Sbjct: 129 PSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAILTPMPMP 175
>10_08_0952 -
21770449-21770718,21771032-21771277,21771677-21771953,
21772241-21772518,21773451-21773960
Length = 526
Score = 27.5 bits (58), Expect = 8.6
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +2
Query: 263 IVDALLEAGHEVTWVT-PYPPSELAK--GLKIVDVSAT-VSISKTVDMHEQRNSNTGVSF 430
++ A+ +AG VTWV+ P + ++ GLK A + D+HEQ S G
Sbjct: 399 MIRAVRQAGLIVTWVSDPMHGNTISAPCGLKTRSFDAIRCELRAFFDVHEQEGSYPGGIH 458
Query: 431 VKALAENITRVSLATPGSTAGDRPGEY 511
++ +N+T + T D Y
Sbjct: 459 LEMTGQNVTECIGGSKTVTLDDLSSRY 485
>07_03_1310 -
25673140-25673418,25673837-25674082,25674189-25674465,
25675474-25675751,25675845-25676378
Length = 537
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 263 IVDALLEAGHEVTWVTPYPPSELAK---GLKIVDVSATVS-ISKTVDMHEQRNSNTGVSF 430
++ A+ +G VTW+T K GLK + ++ + D+H+Q S+ G
Sbjct: 407 LIRAVRNSGQIVTWITDPMHGNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGIH 466
Query: 431 VKALAENIT 457
++ +N+T
Sbjct: 467 LEMTGQNVT 475
>07_03_1257 - 25241194-25242018
Length = 274
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = -3
Query: 305 PRSPRDQPQATRRLSL---CEGVVVREGIGNTQSTWYARADVT---THTKKKSSPRHL 150
PRSPR PQA R SL V R+ + S +R T T T ++ PR L
Sbjct: 34 PRSPRPMPQAVRHRSLQPPAPDVAGRDSTPSPASMTPSRCRTTLASTTTTRRRPPRRL 91
>03_02_0668 -
10290541-10290644,10290777-10290911,10291812-10291905,
10291994-10292089,10292458-10292639,10293578-10293658,
10293746-10293875,10293996-10294181,10294567-10294692
Length = 377
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 565 CPVTSFGIVEERFRDDRVVFPWTIACCRARRC-QGNPGDVLGQSLHE 428
CPV F I + + R V AC R+C G G+V+G ++ +
Sbjct: 286 CPVNVFDIEDLGNGEKRAVVARPRACTLCRQCVMGPTGEVMGPTVEQ 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,475
Number of Sequences: 37544
Number of extensions: 313507
Number of successful extensions: 1061
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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