Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0649
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)                 32   0.40 
SB_37035| Best HMM Match : Homeobox (HMM E-Value=9.6e-09)              29   2.2  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     29   2.9  
SB_33540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_3547| Best HMM Match : MGC-24 (HMM E-Value=8.1)                     29   3.8  
SB_55788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      28   5.0  
SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)                 28   6.6  
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  27   8.7  
SB_4074| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_1145| Best HMM Match : AalphaY_MDB (HMM E-Value=2.7)                27   8.7  
SB_48871| Best HMM Match : WD40 (HMM E-Value=0.0073)                   27   8.7  

>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/86 (22%), Positives = 40/86 (46%)
 Frame = -2

Query: 516 ASYSPGRSPAVEPGVARETLVMFSAKAFTKDTPVFEFLCSCMSTVLLIDTVALTSTIFRP 337
           A+ S   +P++E  +      +  A+A    +PV     S +++ +   ++A TST   P
Sbjct: 439 ATTSTTSTPSLESSMTSNNTTLTLAEAVATSSPVLPTTTSVLTSSMEPSSMATTSTTSTP 498

Query: 336 LASSLGGYGVTQVTS*PASSNASTIP 259
           L SS+     T   +   ++++  +P
Sbjct: 499 LESSMTTNSTTSTLAEAVATSSPVLP 524


>SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)
          Length = 642

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 463 NPGDVLGQSLHERYTSIRVSLLMHVHRFTYRYCSADVDYLQT 338
           N G ++GQ++    T  R S   HV     RY  A VDY+ T
Sbjct: 60  NMGSIMGQAVQSNVTEERGSPPEHVVSLCMRYAEARVDYMGT 101


>SB_37035| Best HMM Match : Homeobox (HMM E-Value=9.6e-09)
          Length = 243

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -1

Query: 400 LMHVHRFTYR-YCSADVDYLQTFGQFARRIRSHPGHLVTSLKQRVDYPFARELW 242
           ++  HRFT   +      +L+   Q A R+R  P   V   + R  +P  R +W
Sbjct: 74  ILETHRFTRESHAKLQAMWLEAHYQEAERLRGRPLGPVDKYRVRKKFPLPRTIW 127


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = +2

Query: 350  VDVSATVSISKTVDMHEQRNSNTGVSFVKALAENITRVSLATPGSTAGDRPGEYDAVITE 529
            +DV AT++   TV +  Q N NT  +    + +NI   +  T G++  + PG +  +   
Sbjct: 2114 IDV-ATLTAGTTVKLQIQLNDNTYANANFDVIDNIVLSNFLTTGASITNGPGTFKRL--- 2169

Query: 530  TFFNDAEAG 556
            T + D +AG
Sbjct: 2170 TIYVDIKAG 2178


>SB_33540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = +2

Query: 326 ELAKGLKIVDVSATVSISKTVDMHEQRNSNTGVSFVKALAENITRVSLATPGSTAGDRPG 505
           EL + L + +    V + K++D  ++ +  +   +   L +  T+  +A    T  D   
Sbjct: 60  ELLEKLTVTEEKDRVQLLKSIDDIQEMDDESEEIYASGLLKRYTKRPVALENVTLADWAA 119

Query: 506 EYDAVITETFFN 541
            YD+     FFN
Sbjct: 120 WYDSCGISVFFN 131


>SB_3547| Best HMM Match : MGC-24 (HMM E-Value=8.1)
          Length = 387

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 304 PGHLVTSLKQRVDYPFARELWCAKVSGTRRARGTHAPTSPR 182
           PGHL+      V +PF + L  ++  G R  + T A T+P+
Sbjct: 37  PGHLLVPPATLVAHPFPQSLHPSEEQGERTVKQTLALTAPK 77


>SB_55788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 304 PGHLVTSLKQRVDYPFARELWCAKVSGTRRARGTHAPTSPR 182
           PGHL+      V +PF + L  ++  G R  + T A T+P+
Sbjct: 37  PGHLLVPPATLVAHPFPQSLHPSEEQGERTVKQTLALTAPK 77


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 332  PVRSEDTESPRSPRDQPQATRRLSLCEGVVVREGIGNTQSTWYARADVTTHTKKKSSP 159
            PV +E   +P+ PR QP  +   ++ E     E  GNT           +H++K+++P
Sbjct: 1160 PVPTEKVITPKPPRKQPSFSTSETIVEACEDEEESGNTSGKNNGAGG--SHSEKQNTP 1215


>SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
          Length = 439

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 474 VARETLVMFSAKAFTKDTP---VFEFLCSCMSTVLLIDTVALTSTIFRPLASSLGGYGVT 304
           +A  + V  S   FT   P   +   +  C+S+ LLI + A T  + R  AS + G+G  
Sbjct: 253 IALISTVTMSLGVFTPLIPLKIILTLIVICISSPLLIMSAAYTVIMIRSRASHINGHGAR 312

Query: 303 Q 301
           +
Sbjct: 313 E 313


>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 335 WPVRSEDTESPRSPRDQPQATRRLSLCEGVVVRE 234
           W      T+S  SP+  PQ  R++S    V VRE
Sbjct: 167 WKFADGPTQSSMSPKISPQVPRKVSGTSSVEVRE 200


>SB_4074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 379 TYRYCSADVDYLQTFGQFARRIRSHPGHLVTSLK 278
           +Y YC     +      +  R+   PGHLV +L+
Sbjct: 133 SYPYCRIASRFASRIASYPYRVAEEPGHLVVTLR 166


>SB_1145| Best HMM Match : AalphaY_MDB (HMM E-Value=2.7)
          Length = 229

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 379 TYRYCSADVDYLQTFGQFARRIRSHPGHLVTSLK 278
           +Y YC     +      +  R+   PGHLV +L+
Sbjct: 110 SYPYCRIASRFASRIASYPYRVAEEPGHLVVTLR 143


>SB_48871| Best HMM Match : WD40 (HMM E-Value=0.0073)
          Length = 614

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 379 TYRYCSADVDYLQTFGQFARRIRSHPGHLVTSLK 278
           +Y YC     +      +  R+   PGHLV +L+
Sbjct: 472 SYPYCRIASRFASRIASYPYRVAEEPGHLVVTLR 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,764,752
Number of Sequences: 59808
Number of extensions: 372599
Number of successful extensions: 1199
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)