Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0649
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF077539-2|AAK84579.2|  427|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z50176-1|CAA90538.2|  408|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF022972-7|AAM29671.1|  124|Caenorhabditis elegans Hypothetical ...    27   7.7  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical
           protein Y75B12B.6 protein.
          Length = 896

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 232 VSGTRRARGTHAPTSPRTPRR 170
           V GTRR    HAPT+P TP +
Sbjct: 858 VEGTRRGSVEHAPTTPTTPTK 878


>AF077539-2|AAK84579.2|  427|Caenorhabditis elegans Hypothetical
           protein T25D3.3 protein.
          Length = 427

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +2

Query: 293 EVTWVTPYPPSELAKGLKIVDVSATVSISKTVDMHEQRNSNTGVSFVKAL 442
           ++   T   P+ + + LKI D+++T ++    D+     ++TGV+F+ AL
Sbjct: 300 QIAETTSLDPAVIDRVLKIPDLASTAAMKVARDVGINGGTSTGVNFLAAL 349


>Z50176-1|CAA90538.2|  408|Caenorhabditis elegans Hypothetical
           protein C09G1.1 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 377 SKTVDMHEQRNSNT-GVSFVKALAENITRVSLATPGSTAGDRPGEYDAVITETFFNDAEA 553
           +K + M +  N+ T G+     + +  T  ++   G+ A     + +++ T+   ND E 
Sbjct: 253 TKDIIMRDNSNTETDGIMEKIIIKQETTTGAIKQIGTDALSTVQKTESMATDAMVNDGET 312

Query: 554 GYGAVLQVALD 586
             GA+ Q+  D
Sbjct: 313 TIGAIKQIGTD 323


>AF022972-7|AAM29671.1|  124|Caenorhabditis elegans Hypothetical
           protein F10D2.8 protein.
          Length = 124

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 263 IVDALLEAGHEVTWVTP 313
           I DAL +AGH VT+ TP
Sbjct: 37  IADALTDAGHNVTFFTP 53


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 25/84 (29%), Positives = 35/84 (41%)
 Frame = -2

Query: 510 YSPGRSPAVEPGVARETLVMFSAKAFTKDTPVFEFLCSCMSTVLLIDTVALTSTIFRPLA 331
           Y P R+  V PG   E+  +   +    +TP      S  S  + I  VAL +++  P  
Sbjct: 366 YQPPRTLPVAPGDPSESTFV---QIHETETPSAPSPASPSSVSVTIPRVALPASVSVPSP 422

Query: 330 SSLGGYGVTQVTS*PASSNASTIP 259
           S      VT   S PA S A+  P
Sbjct: 423 SPASNVPVTITLSAPAKSPATYGP 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,786,496
Number of Sequences: 27780
Number of extensions: 257027
Number of successful extensions: 790
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)