Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0649
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 28 4.1
At1g07150.1 68414.m00761 protein kinase family protein contains ... 28 4.1
At4g33900.1 68417.m04810 kelch repeat-containing F-box family pr... 28 5.4
At3g27910.1 68416.m03482 kelch repeat-containing protein contain... 28 5.4
At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate aldol... 28 5.4
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 27 7.2
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 27 7.2
At4g39980.1 68417.m05662 2-dehydro-3-deoxyphosphoheptonate aldol... 27 7.2
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ... 27 7.2
At2g01210.1 68415.m00033 leucine-rich repeat transmembrane prote... 27 9.5
At1g18920.1 68414.m02355 hypothetical protein contains Pfam prof... 27 9.5
>At4g18465.1 68417.m02740 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 704
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 507 SPGRSPAVEPGVARETLVMFSAKAFTKDTPVFEFLCSCMSTVLLID 370
+PG P +EP + FS K + PV +++ S +ST+LLI+
Sbjct: 236 TPG--PKLEPAILSVEGRGFSVKIHYVEEPVSDYIRSVVSTILLIN 279
>At1g07150.1 68414.m00761 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 499
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 457 GDVLGQSLHERYTSIRVSLLMHVHRFTYRYC 365
G + ++L +RYT+ VS L HVH + +C
Sbjct: 119 GKIEDETLLQRYTACLVSALRHVHSQGFVHC 149
>At4g33900.1 68417.m04810 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 379
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 346 LQTFGQFARRIRS--HPGHLVTSLKQRVDYPFARELWCAKVSGTRRARG 206
L TF + R +S H G L S ++ V ++WCA+++ +R G
Sbjct: 297 LPTFTNYYRNFKSADHCGKLAISWEEYVLVDDETKIWCAEIAIQKRQNG 345
>At3g27910.1 68416.m03482 kelch repeat-containing protein contains
Pfam profile PF01344: Kelch motif
Length = 294
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 334 GQFARRIRSHPGHLVTSLKQRVDYPFARELWCAKVSGTRRAR 209
G R+ +H G LV L +D ELWC K++ RR +
Sbjct: 224 GTLGSRMANHGGKLVILLN--LDKNGGTELWCIKIALERRGQ 263
>At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate
aldolase, putative / 3-deoxy-D-arabino-heptulosonate
7-phosphate synthase, putative / DAHP synthetase,
putative similar to 3-deoxy-D-arabino-heptulosonate
7-phosphate GI:170224 from [Nicotiana tabacum],
SP|P21357 from Solanum tuberosum; contains Pfam Class-II
DAHP synthetase family domain PF01474
Length = 527
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +2
Query: 263 IVDALLEAGHEVTWVTPYPPSELAK---GLKIVDVSATVS-ISKTVDMHEQRNSNTGVSF 430
++ + AG VTWV+ K GLK A ++ + D+HEQ S+ G
Sbjct: 404 LIREVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAILAEVRAFFDVHEQEGSHPGGIH 463
Query: 431 VKALAENIT 457
++ +N+T
Sbjct: 464 LEMTGQNVT 472
>At5g24280.1 68418.m02856 expressed protein ; expression supported
by MPSS
Length = 1634
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 414 FEFLCSCMSTVLLIDTVALTSTIFRPLASSLGGYGVTQV 298
F ++ C++T+ L D ++ T RP+A + G + ++
Sbjct: 359 FPYIQFCLATIFLCDELSKTGRTERPVAFQVNGEDLAEI 397
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 27.5 bits (58), Expect = 7.2
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Frame = +2
Query: 350 VDVSAT---VSISKTVDMHEQRNSNTGVSFVKALAENITRVSLATPGSTAGDRPGEYDAV 520
VD SAT +++ KTV R S+TG F+ L+ ++T T + G +P ++DAV
Sbjct: 618 VDCSATSDLLAVVKTVIDAAGRGSSTG--FI--LSTSMTISETHTALLSGGLKPQDFDAV 673
Query: 521 I----TETFFNDAEAGYGAVLQVALDLD 592
I +E +F + + L LD D
Sbjct: 674 ICSSGSELYFTSSGSEDKTALPYTLDAD 701
>At4g39980.1 68417.m05662 2-dehydro-3-deoxyphosphoheptonate aldolase
1 / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
1 / DAHP synthetase 1 (DHS1) nearly identical to
SP|P29965
Length = 525
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 263 IVDALLEAGHEVTWVTPYPPSELAK---GLKIVDVSATVS-ISKTVDMHEQRNSNTGVSF 430
++ A+ +G VTWV K GLK + ++ + +D+HEQ S+ G
Sbjct: 404 LIRAVRRSGQIVTWVCDPMHGNTIKAPCGLKTRAFDSILAEVRAFLDVHEQEGSHAGGIH 463
Query: 431 VKALAENIT 457
++ +N+T
Sbjct: 464 LEMTGQNVT 472
>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425
Length = 695
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 317 PPSELAKGLKIVDVSATVSISKTVDMHEQRNSNTGVSFVKALAENITRVSLATPGST 487
P S+LA+ TV+ KT M E N+ ++ +KA++ N RVS PGS+
Sbjct: 610 PNSDLAQSQNEKKPLETVTEDKTEIMPEIL-LNSPIANIKAISPNSKRVSPPQPGSS 665
>At2g01210.1 68415.m00033 leucine-rich repeat transmembrane protein
kinase, putative
Length = 716
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 501 GRSPAVEPGVARETLVMFSAKAFTKDTPVFEFLCSCMS 388
GRSPAVE G + LV + + P+ + L C++
Sbjct: 634 GRSPAVEVGTSEMDLVRWVQVCIEEKKPLCDVLDPCLA 671
>At1g18920.1 68414.m02355 hypothetical protein contains Pfam profile
PF03794: Domain of Unknown function
Length = 980
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 367 SIYK*NGGHA*AEKLEYWCIFREGFGREHHQ 459
SI+K H E+ E WC+FR+ F E +
Sbjct: 734 SIHKLLSEHLHREETELWCLFRDCFTIEEQE 764
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,017,309
Number of Sequences: 28952
Number of extensions: 238737
Number of successful extensions: 660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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