Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0648
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    56   3e-09
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.3  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   6.3  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = +3

Query: 255 PKFKTQEXQLXFCQISFXRYXDDX-NRYLYLTEXQDRNXKLFFSLLDCXIEKFMPIVYTP 431
           P  +T + Q+  C   +    D+   + LYL++    N  LF++L+   + + +PI+YTP
Sbjct: 46  PIVETLQQQVDRCYDQYKAIGDEPLQKNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTP 105

Query: 432 TVGLACQXFGLVYRRPRGLYITI-HDKXTYL 521
           T G A + F  +YR P G Y+ I H+  +Y+
Sbjct: 106 TEGDAIKQFSDIYRYPEGCYLDIDHNDLSYI 136


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -1

Query: 451 WHANPTVGVYTIGM-NFSM 398
           WH +P +G+ T+GM NF++
Sbjct: 329 WHESPNMGLGTVGMGNFTV 347


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -1

Query: 451 WHANPTVGVYTIGM-NFSM 398
           WH +P +G+ T+GM NF++
Sbjct: 329 WHESPNMGLGTVGMGNFTV 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,500
Number of Sequences: 5004
Number of extensions: 29852
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)