BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0648 (598 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 56 3e-09 SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.3 SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 6.3 >SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|||Manual Length = 565 Score = 56.4 bits (130), Expect = 3e-09 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Frame = +3 Query: 255 PKFKTQEXQLXFCQISFXRYXDDX-NRYLYLTEXQDRNXKLFFSLLDCXIEKFMPIVYTP 431 P +T + Q+ C + D+ + LYL++ N LF++L+ + + +PI+YTP Sbjct: 46 PIVETLQQQVDRCYDQYKAIGDEPLQKNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTP 105 Query: 432 TVGLACQXFGLVYRRPRGLYITI-HDKXTYL 521 T G A + F +YR P G Y+ I H+ +Y+ Sbjct: 106 TEGDAIKQFSDIYRYPEGCYLDIDHNDLSYI 136 >SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 416 Score = 25.4 bits (53), Expect = 6.3 Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 1/19 (5%) Frame = -1 Query: 451 WHANPTVGVYTIGM-NFSM 398 WH +P +G+ T+GM NF++ Sbjct: 329 WHESPNMGLGTVGMGNFTV 347 >SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual Length = 416 Score = 25.4 bits (53), Expect = 6.3 Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 1/19 (5%) Frame = -1 Query: 451 WHANPTVGVYTIGM-NFSM 398 WH +P +G+ T+GM NF++ Sbjct: 329 WHESPNMGLGTVGMGNFTV 347 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,858,500 Number of Sequences: 5004 Number of extensions: 29852 Number of successful extensions: 55 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 55 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 260219058 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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