Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0648
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 87 1e-17
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 84 9e-17
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 82 4e-16
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 77 1e-14
02_05_0228 - 27010982-27011272,27011401-27011506,27011616-270117... 74 1e-13
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 63 1e-10
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351... 58 5e-09
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/99 (40%), Positives = 59/99 (59%)
Frame = +3
Query: 255 PKFKTQEXQLXFCQISFXRYXDDXNRYLYLTEXQDRNXKLFFSLLDCXIEKFMPIVYTPT 434
P +QE Q + Y RY+ + + Q+RN +LF+ LL +E+ +P+VYTPT
Sbjct: 62 PSIVSQELQEKKLMHNLRNYTVPLQRYIAMMDLQERNERLFYKLLIDNVEELLPVVYTPT 121
Query: 435 VGLACQXFGLVYRRPRGLYITIHDKXTYLIF*RTGPEHA 551
VG ACQ +G +YRRP+GLYI++ DK L + PE +
Sbjct: 122 VGEACQKYGSIYRRPQGLYISLKDKGKILEVLKNWPERS 160
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 83.8 bits (198), Expect = 9e-17
Identities = 37/97 (38%), Positives = 60/97 (61%)
Frame = +3
Query: 255 PKFKTQEXQLXFCQISFXRYXDDXNRYLYLTEXQDRNXKLFFSLLDCXIEKFMPIVYTPT 434
P +Q+ Q+ + +Y RY+ + + Q+RN +LF+ LL +E+ +P+VYTPT
Sbjct: 131 PAVVSQDLQVKKIMHNLRQYSVPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPT 190
Query: 435 VGLACQXFGLVYRRPRGLYITIHDKXTYLIF*RTGPE 545
VG ACQ +G ++R+P+GLY+++ DK L R PE
Sbjct: 191 VGEACQKYGSIFRQPQGLYVSLKDKGKVLDVLRNWPE 227
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 81.8 bits (193), Expect = 4e-16
Identities = 39/97 (40%), Positives = 59/97 (60%)
Frame = +3
Query: 255 PKFKTQEXQLXFCQISFXRYXDDXNRYLYLTEXQDRNXKLFFSLLDCXIEKFMPIVYTPT 434
P +QE Q + ++ RY+ L + Q+RN +LF+ LL +E+ +P+VYTPT
Sbjct: 65 PVVLSQELQEKRLLQNVRQFQVPLQRYMALMDLQERNERLFYKLLIDNVEELLPVVYTPT 124
Query: 435 VGLACQXFGLVYRRPRGLYITIHDKXTYLIF*RTGPE 545
VG ACQ +G ++RRP+GLYI++ +K L R PE
Sbjct: 125 VGEACQKYGSIFRRPQGLYISLKEKGRILELLRNWPE 161
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/99 (35%), Positives = 58/99 (58%)
Frame = +3
Query: 255 PKFKTQEXQLXFCQISFXRYXDDXNRYLYLTEXQDRNXKLFFSLLDCXIEKFMPIVYTPT 434
P +QE Q + +Y +Y+ + + Q+ N +LF+ LL +E+ +P+VYTPT
Sbjct: 85 PAIVSQELQERKIMHNIRQYQLPLQKYMAMMDLQEGNERLFYKLLIDNVEELLPVVYTPT 144
Query: 435 VGLACQXFGLVYRRPRGLYITIHDKXTYLIF*RTGPEHA 551
VG ACQ +G ++ RP+GLYI++ +K L + PE +
Sbjct: 145 VGEACQKYGSIFSRPQGLYISLKEKGKILEVLKNWPERS 183
>02_05_0228 -
27010982-27011272,27011401-27011506,27011616-27011767,
27011919-27011930
Length = 186
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/68 (47%), Positives = 47/68 (69%)
Frame = +3
Query: 348 EXQDRNXKLFFSLLDCXIEKFMPIVYTPTVGLACQXFGLVYRRPRGLYITIHDKXTYLIF 527
E +R+ +LF+ LL +E+ +P+VYTPTVG ACQ +G +YRRP+GLYI++ DK L
Sbjct: 2 EKGERSERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKILEV 61
Query: 528 *RTGPEHA 551
+ PE +
Sbjct: 62 LKNWPERS 69
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/60 (43%), Positives = 39/60 (65%)
Frame = +3
Query: 330 RYLYLTEXQDRNXKLFFSLLDCXIEKFMPIVYTPTVGLACQXFGLVYRRPRGLYITIHDK 509
++ L DRN L++ +L I+ F PI+YTPTVGL C+ + ++RRPRG+Y + DK
Sbjct: 112 KWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCENYSGLFRRPRGMYFSAKDK 171
>07_03_0474 +
18534071-18534238,18534349-18534445,18534992-18535122,
18535191-18535286,18535459-18535464,18535521-18535688,
18535892-18536020,18536613-18536673,18536928-18537031,
18537137-18537220,18538433-18538461,18538506-18538617,
18539200-18539313,18539767-18539832,18540237-18540309,
18540396-18540482,18540710-18540764,18540869-18540940,
18541039-18541101,18541177-18541294,18541377-18541451
Length = 635
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Frame = +3
Query: 330 RYLYLTEXQDRNXKLFFS---LLDCXIEKFMPIVYTPTVGLACQXFGLVYRRPRGLYITI 500
++ L DRN +++ L+D IE+ PIVYTPTVGL CQ + ++RRPRG+Y +
Sbjct: 147 KWRILNRLHDRNETMYYKAEVLID-NIEEHAPIVYTPTVGLVCQNYSGLFRRPRGMYFSA 205
Query: 501 HDK 509
D+
Sbjct: 206 EDR 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,250,694
Number of Sequences: 37544
Number of extensions: 171207
Number of successful extensions: 295
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -