Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0646
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   1.2  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   1.2  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    27   1.6  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   3.6  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   3.6  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   4.8  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   6.3  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   8.4  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   8.4  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 321  PRSQADIDYELKVRKFLEMTKEDSDYEEKVRNFLA 425
            P +   ++  L+  K L+  K+D +Y  +VR+F A
Sbjct: 1360 PEAYLQLEELLQTSKILQFVKDDPNYVARVRDFYA 1394


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 264 PYGYQPPVQTADDIAAQPPPRSQADIDYELKVRK 365
           PY      Q +    AQ PP  Q+DI  +L+++K
Sbjct: 687 PYDLPSSSQISSSALAQLPPSMQSDIQQQLRLQK 720


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 273 YQPPVQTADDIAAQPPPRSQADID 344
           YQ PV T ++    PPP  + DI+
Sbjct: 10  YQKPVDTEEENDKNPPPLDEGDIE 33


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 23/87 (26%), Positives = 33/87 (37%)
 Frame = +3

Query: 234 ISDSQFAFNHPYGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSDYEEKVR 413
           ISDS    + P    P     DDI       S AD+D E+     LE  +++ D +E V 
Sbjct: 355 ISDSPKLLSIPLNNVPSKSLNDDITQDELNSSNADVDEEVIETTSLE--EKNVDNQEFVT 412

Query: 414 NFLAETTQYKRNRKMQELGQQQQPPMP 494
           +        +      +     QPP P
Sbjct: 413 SISNGNQTLEDTSHSPQTQPPFQPPYP 439


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +2

Query: 2   RRKSAVKAKRSVQAAHHRHRVTRPVLVPHRIHHLHHQIRVIQKVLGR 142
           RR S   + +      HR  +T     PHR  H H+ I     V G+
Sbjct: 256 RRPSLTYSPKRQSTGLHRRSLTNYFKFPHRNAHQHNAIAHNPSVFGK 302


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 234 ISDSQFAFNHPYGYQPPVQTAD-DIAAQPPPRSQADIDYELKVRKFLEMTKEDSDYEEKV 410
           +SD +   +   G  P   T D +I    P  S    +  ++     E+  E S+Y+ +V
Sbjct: 217 LSDEETNEDDLLGQSPTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDVRV 276

Query: 411 RNFLAETT 434
            NFL E+T
Sbjct: 277 LNFLNEST 284


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 11  SAVKAKRSVQAAHHRHRVTRPVLVP--HRIHHLHHQIRVIQKVLG 139
           SAVK ++  + +  R  + + + +   HR HH HH+  +I+   G
Sbjct: 452 SAVKTEKEKKMSAPRRSLDKLIRIGSLHRHHHHHHKTDLIESDSG 496


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 140 RRSVVLNPTTKGSALCHR*ASAWR 211
           R+S+  +P++KGS +C R   A++
Sbjct: 4   RKSISKSPSSKGSTVCFRCGQAFQ 27


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 391 QTMKKKFVTSSLKQRNTNVTARCKNLANNSS 483
           + +K+K  T  L ++ +NVT++ K+ A NSS
Sbjct: 421 RVLKEKLQTY-LDKKESNVTSKIKSTAENSS 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,234
Number of Sequences: 5004
Number of extensions: 26289
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)