Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0646
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 33 0.13
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 29 2.1
03_02_0935 - 12517564-12517650,12517995-12518060,12518156-125181... 29 2.7
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093... 29 2.7
01_06_0292 + 28243408-28243543,28243631-28243760,28243860-28244550 29 2.7
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264... 28 3.6
05_04_0158 + 18613265-18615304 28 3.6
02_04_0055 - 19290975-19292312 28 4.8
05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,949... 27 6.3
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 27 6.3
08_01_0779 - 7553278-7553631,7553765-7553977,7554132-7554617,755... 27 8.4
04_01_0477 - 6221990-6223224,6227722-6228817 27 8.4
03_01_0259 - 1996427-1998772 27 8.4
01_07_0082 - 40965947-40967023 27 8.4
01_06_0530 + 30035854-30036765 27 8.4
>01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 279 PPVQTADDIAAQPPPRSQADIDYELKVRKFLEM 377
PP++ DD++ Q PPR+ AD+ +K + LEM
Sbjct: 1072 PPLEEPDDVSGQLPPRNGADLTGGVKEKVDLEM 1104
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 261 HP-YGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLE-MTKEDSDYEEKVRNFLAETT 434
HP Y + PP +A AA PPP +D + + ++ K +E + K ++E +R+ +
Sbjct: 82 HPAYMHPPPFDSAPPPAAAPPP---SDPELQKRIDKVVEYIAKNGPEFEVVIRDKQHDNP 138
Query: 435 QY 440
Y
Sbjct: 139 DY 140
>03_02_0935 -
12517564-12517650,12517995-12518060,12518156-12518185,
12518279-12518377,12518578-12518673,12519221-12519271,
12519358-12519424,12519516-12519610,12519928-12520009,
12520609-12520658,12520741-12520791,12521749-12521832,
12521918-12522028,12522276-12522425,12522858-12522975,
12523118-12523290
Length = 469
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +3
Query: 258 NHPYGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRNFLAETTQ 437
N YG P + A AAQ Q D + L + + T+ + + E + N AE
Sbjct: 99 NMEYGLDPTIGKAIMQAAQEVAEGQLDDHFPLVIWQTGSGTQSNMNANEVIANRAAEILG 158
Query: 438 YKRNRK 455
+KR K
Sbjct: 159 HKRGEK 164
>01_06_0846 +
32408333-32408484,32408560-32408926,32409021-32409301,
32409877-32409931,32410137-32410331,32410417-32410569
Length = 400
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 270 GYQPPVQTADDIAAQPPPRSQA 335
G PPVQT D A PPP ++A
Sbjct: 230 GGAPPVQTQDQAQATPPPDTRA 251
>01_06_0292 + 28243408-28243543,28243631-28243760,28243860-28244550
Length = 318
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 20 KAKRSVQAAHHRHRVTRPVLVPHRIHHLHHQI 115
K K+ A HH H+ P H HH HH++
Sbjct: 112 KLKKKAMAMHHHHQ-PPPPQQQHYHHHHHHRV 142
>06_01_0368 +
2645007-2645317,2645422-2645509,2648927-2649183,
2649453-2649504,2649527-2649838
Length = 339
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 228 FYISDSQFAFNHPYGYQPPVQTADDIAAQPPPRSQA 335
F +S + G PPVQT D + PPP ++A
Sbjct: 271 FQVSTEDVIGSSQLGGAPPVQTQDQPPSTPPPDTRA 306
>05_04_0158 + 18613265-18615304
Length = 679
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 327 SQADIDYELKVRKFLEMTKEDSDYEEKVRNFLAETTQYKRNRKMQELGQQQQ 482
S+ADI L + E+ KE + K+++ L + Q K QEL ++QQ
Sbjct: 514 SKADIFSSLDAKIKHELGKEQQEEAGKIKHELVKEQQEKAGNIKQELVKEQQ 565
>02_04_0055 - 19290975-19292312
Length = 445
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 381 WSSRGTCAPSTHSQYQPETAA 319
W+SRG A H Q QP AA
Sbjct: 215 WASRGGSAAGAHEQQQPRAAA 235
>05_03_0190 +
9485701-9485806,9487182-9487368,9489662-9489733,
9490089-9490160,9490514-9490585,9490845-9490916,
9491355-9491426,9491503-9491577,9492008-9492073,
9492144-9492188,9492276-9492340,9492429-9492811,
9492878-9493076,9493150-9493308,9493386-9493504,
9493652-9493862,9493993-9494224,9494307-9494457,
9494550-9494870
Length = 892
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 393 LNLLWSSRGTCAPSTHSQYQPETAA 319
++L W+ +GTC T Y P +A
Sbjct: 466 IHLFWAGKGTCCVPTQGHYGPTISA 490
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 393 LNLLWSSRGTCAPSTHSQYQPETAA 319
++L W+ +GTC T Y P +A
Sbjct: 546 IHLFWAGKGTCCIPTQDNYGPSISA 570
>08_01_0779 -
7553278-7553631,7553765-7553977,7554132-7554617,
7554729-7554796,7554918-7555215,7555288-7555364,
7555703-7555874,7555951-7556021,7557371-7557392
Length = 586
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 348 ELKVRKFLEMTKEDSDYEEKVRNFLAETTQYKRNRK-MQELGQQQQPPMPE 497
E+K+ L+M ++E + N L + Y++ K +QE +QQQP PE
Sbjct: 469 EVKLEHGLQMLTIFKNHESET-NILEDFDFYEQREKALQENRRQQQPASPE 518
>04_01_0477 - 6221990-6223224,6227722-6228817
Length = 776
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 29 RSVQAAHHRHRVTRPVLVPHRIHHLHHQIRVIQKVLGRR 145
R AHHRH+ + P++ + + I V+ LGRR
Sbjct: 53 RDFLLAHHRHQPSLPLIAACDYADIMYLIDVLTLTLGRR 91
>03_01_0259 - 1996427-1998772
Length = 781
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 71 PVLVPHRI---HHLHHQIRVIQKVLGRRSVV 154
P+LV + +H HH +++I + GRR VV
Sbjct: 731 PILVKKNVRICNHCHHALKLISRYSGRRIVV 761
>01_07_0082 - 40965947-40967023
Length = 358
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 264 PYGYQPPVQTADDIAAQPPPRSQADIDY 347
PYG PP Q AQPPP QA Y
Sbjct: 251 PYGTAPPPQYGYGYPAQPPP-PQAGYGY 277
>01_06_0530 + 30035854-30036765
Length = 303
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 264 PYGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRNFLAET 431
P + PP + A PPP S AD + K + D+D E + +FL T
Sbjct: 13 PRRHSPPALHPAVVPAYPPPESDADESWVWSQIK--AEARRDADAEPALASFLYAT 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,024,108
Number of Sequences: 37544
Number of extensions: 212615
Number of successful extensions: 993
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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