Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0646
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)                     29   1.6  
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_57757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                28   4.9  
SB_52855| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)               27   8.6  
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_53846| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_35305| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
          Length = 1146

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 348 ELKVRKFLEMTKEDSDYEEKVRNFLAETTQYKRNRKMQELGQQQQPPMP 494
           +LK ++  ++ +E    +++ +    +  Q ++ R  Q L QQQQPP P
Sbjct: 743 QLKQKQQQQLHQEQLKQQQQQQLHREQLKQQQQQRLQQHLQQQQQPPPP 791


>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 56  HRVTRPVLVPHRIHHLHHQIRV 121
           HRVTRPV+V  R + ++H + V
Sbjct: 478 HRVTRPVMVEWRANPIYHLLNV 499


>SB_57757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 8   KSAVKAKRSVQA-AHHRHRVTRPVLVPH 88
           K +  A R V   A HRHR  RP L PH
Sbjct: 19  KGSRTANRGVPMDARHRHRPVRPTLPPH 46


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 47  HHRHRVTRPVLVPHRIHHLHH 109
           HH H ++  ++  HR HH HH
Sbjct: 156 HHHHPLSIAIIHRHRHHHHHH 176


>SB_52855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 47  HHRHRVTRPVLVPHRIHHLHHQIRVIQKVLGRR--SVVLNPTT 169
           HHRH  T  V+ P   HHLH  I +       R  ++V++P++
Sbjct: 48  HHRH--TTIVISPSSYHHLHTTIVISPSSYHHRHITIVISPSS 88


>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
          Length = 131

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 47  HHRHRVTRPVLVPHRIHHLHH 109
           HH HR  + + V H  HH HH
Sbjct: 53  HHHHR--QHITVHHHYHHYHH 71


>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 303 IAAQPPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRNFLAETTQYKRN 449
           +  +PPPR  ++  Y L++  FLE  K   DY    RN +A  T  + N
Sbjct: 526 VLERPPPRWSSNSPYSLQMGFFLE--KASRDYVIFERNGVAGKTNKEFN 572


>SB_53846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = +3

Query: 240 DSQFAFNHPYGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRNF 419
           D   A    YGY+            PPPRSQ             E  K+  DYE+ +++F
Sbjct: 91  DETTAHGGSYGYKDDESKKAPPPRPPPPRSQG-------ASAMSEEEKKQKDYEKYIQDF 143

Query: 420 L 422
           L
Sbjct: 144 L 144


>SB_35305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 270 GYQPPVQTADDIAAQP---PPRSQADIDYELKVRKFLEMT 380
           GY P V  A   A+QP   PP SQA +  E+   KF ++T
Sbjct: 25  GY-PVVSLASQPASQPVSQPPDSQAPLGPEMATSKFKQVT 63


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +3

Query: 282  PVQTADDIAAQPPPRSQADIDYELKV----RKFLEMTKEDSDYEEKVRNFLAETTQYKRN 449
            P Q       +P  +SQ  I  + ++    R+ ++  +     +++ +  + +  Q  + 
Sbjct: 1100 PAQLQQQQLQKPQQQSQPQIAQQQQLHEMQRQQIQQQQMQQQQQQQQQQQIQQQQQQMQQ 1159

Query: 450  RKMQELGQQQQPP--MPE 497
            +++Q+  QQQQPP  MP+
Sbjct: 1160 QQLQQQMQQQQPPQQMPQ 1177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,196,321
Number of Sequences: 59808
Number of extensions: 238907
Number of successful extensions: 916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)