Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0646
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 36 0.016
U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical p... 31 0.46
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 29 2.5
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 28 4.3
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 28 4.3
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 28 4.3
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 28 4.3
AL021503-3|CAA16423.1| 324|Caenorhabditis elegans Hypothetical ... 28 4.3
AL021175-6|CAA15968.1| 363|Caenorhabditis elegans Hypothetical ... 27 5.7
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 7.6
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 7.6
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 7.6
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 7.6
Z82262-8|CAL49437.1| 68|Caenorhabditis elegans Hypothetical pr... 27 10.0
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 10.0
AF098501-7|AAC67402.1| 199|Caenorhabditis elegans Hypothetical ... 27 10.0
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 35.9 bits (79), Expect = 0.016
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +3
Query: 282 PVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRNFLAETTQYKRNRKMQ 461
P ++A PP + A E + + +E E++ R A Q+++ ++ Q
Sbjct: 194 PARSAPQRVPAPPAQQYAPRAPEYPSAQQQQQQREQQQREQQHREHQARLQQHQQQQQQQ 253
Query: 462 ELGQQQQPPMPE 497
+ QQQ+PP P+
Sbjct: 254 QQQQQQRPPQPQ 265
>U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical
protein C28C12.1 protein.
Length = 200
Score = 31.1 bits (67), Expect = 0.46
Identities = 14/76 (18%), Positives = 39/76 (51%)
Frame = +3
Query: 258 NHPYGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRNFLAETTQ 437
N+P + PV+ ++ P +S + D LK + ++ + +D+ +E ++ +++T
Sbjct: 70 NNPKKEEEPVKDGKEVVQDQPKKSSREKDMMLKEKTAIDFSGDDNKKKETMQ--VSKTKS 127
Query: 438 YKRNRKMQELGQQQQP 485
+ N++ ++ + P
Sbjct: 128 ARNNKQKSDVKESATP 143
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 2 RRKSAVKAKRSVQAAHHRHRVTRPVLVPHRIHHLHHQI 115
R + AV ++R H H P PH +HH HH +
Sbjct: 753 RPRKAVSSRRHHYTQPHPHHQQMPHHQPH-LHHAHHPV 789
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 318 PPRSQADIDYELKVRKFLEMTKEDSD----YEEKVRNFLAETTQYKRNRKMQELGQQQ 479
PP +Q +D + K R F+E ++ EE+ R+ L E T+ K + + L +++
Sbjct: 497 PPSTQMQVDRKEKARIFMEKLLQEKKAKKLQEEEERSKLEEETRKKAEKISESLSERK 554
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 318 PPRSQADIDYELKVRKFLEMTKEDSD----YEEKVRNFLAETTQYKRNRKMQELGQQQ 479
PP +Q +D + K R F+E ++ EE+ R+ L E T+ K + + L +++
Sbjct: 583 PPSTQMQVDRKEKARIFMEKLLQEKKAKKLQEEEERSKLEEETRKKAEKISESLSERK 640
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 318 PPRSQADIDYELKVRKFLEMTKEDSD----YEEKVRNFLAETTQYKRNRKMQELGQQQ 479
PP +Q +D + K R F+E ++ EE+ R+ L E T+ K + + L +++
Sbjct: 585 PPSTQMQVDRKEKARIFMEKLLQEKKAKKLQEEEERSKLEEETRKKAEKISESLSERK 642
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 318 PPRSQADIDYELKVRKFLEMTKEDSD----YEEKVRNFLAETTQYKRNRKMQELGQQQ 479
PP +Q +D + K R F+E ++ EE+ R+ L E T+ K + + L +++
Sbjct: 583 PPSTQMQVDRKEKARIFMEKLLQEKKAKKLQEEEERSKLEEETRKKAEKISESLSERK 640
>AL021503-3|CAA16423.1| 324|Caenorhabditis elegans Hypothetical
protein Y68A4A.6 protein.
Length = 324
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 209 RCSVMVILHLGLTIRIQPSVRISASSANRGRHRRPAPAAVS 331
+C+V +LHL T +++ N H P P A S
Sbjct: 282 KCNVQKVLHLYATFDFHDFLKVLFGKVNNSVHPNPIPLAFS 322
>AL021175-6|CAA15968.1| 363|Caenorhabditis elegans Hypothetical
protein Y6E2A.7 protein.
Length = 363
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/39 (23%), Positives = 23/39 (58%)
Frame = +3
Query: 351 LKVRKFLEMTKEDSDYEEKVRNFLAETTQYKRNRKMQEL 467
L++ KFL + D D ++ ++ F + +YK+ ++ ++
Sbjct: 96 LRIGKFLSTLRSDRDEKDVIKEFNRKLIKYKQQKRWSKM 134
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = -2
Query: 447 YVCIALFQRGSYELFLHSLNLLWSSRGTCAPSTHSQYQPETAAGAGRRCRPRFAL 283
++ + + R SY ++ + + S++ +C+P TH+ + AA R ++AL
Sbjct: 975 FIHVQVLDRNSYVMYTSAQS---SAKSSCSPPTHTPSHLQVAAPDASHVRVQWAL 1026
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = -2
Query: 447 YVCIALFQRGSYELFLHSLNLLWSSRGTCAPSTHSQYQPETAAGAGRRCRPRFAL 283
++ + + R SY ++ + + S++ +C+P TH+ + AA R ++AL
Sbjct: 975 FIHVQVLDRNSYVMYTSAQS---SAKSSCSPPTHTPSHLQVAAPDASHVRVQWAL 1026
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = -2
Query: 447 YVCIALFQRGSYELFLHSLNLLWSSRGTCAPSTHSQYQPETAAGAGRRCRPRFAL 283
++ + + R SY ++ + + S++ +C+P TH+ + AA R ++AL
Sbjct: 975 FIHVQVLDRNSYVMYTSAQS---SAKSSCSPPTHTPSHLQVAAPDASHVRVQWAL 1026
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = -2
Query: 447 YVCIALFQRGSYELFLHSLNLLWSSRGTCAPSTHSQYQPETAAGAGRRCRPRFAL 283
++ + + R SY ++ + + S++ +C+P TH+ + AA R ++AL
Sbjct: 975 FIHVQVLDRNSYVMYTSAQS---SAKSSCSPPTHTPSHLQVAAPDASHVRVQWAL 1026
>Z82262-8|CAL49437.1| 68|Caenorhabditis elegans Hypothetical
protein C43F9.11 protein.
Length = 68
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -2
Query: 408 LFLHSLN--LLWSSRGTCAPSTHSQYQPETA 322
+FL ++ L++S+ GTC P + +PET+
Sbjct: 1 MFLRAITAVLMYSTLGTCGPEKSDKEKPETS 31
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 44 AHHRHRVTRPVLVPHRIHHLHH 109
AHH H PH HH HH
Sbjct: 622 AHHGHHGAHHHHAPHHEHHEHH 643
>AF098501-7|AAC67402.1| 199|Caenorhabditis elegans Hypothetical
protein H28G03.3 protein.
Length = 199
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 77 LVPHRIHHLHHQIRVIQKVLGRRSVVLNP 163
++P +HHLH+ +++I S NP
Sbjct: 19 MIPLHVHHLHYTVKLIFTEYSPHSPTYNP 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,815,480
Number of Sequences: 27780
Number of extensions: 164022
Number of successful extensions: 802
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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