Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0646
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.77 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.1  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   5.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 47  HHRH--RVTRPVLVPHRIHHLHHQIRVIQKVLGRRSVVLN 160
           HH+H      P + P   HH HHQ + +Q +  R+   L+
Sbjct: 335 HHQHGNHTMGPTMGPPHHHH-HHQTQSLQHLHYRQPPTLS 373


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 370 SR*PKKIQTMKKKFVTSSLKQRNTNVTARCKNLANNS 480
           SR PK I ++  K + ++    N N      N  NN+
Sbjct: 309 SREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNN 345


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 245 TIRIQPSVRISASSANRGRHRRPAPA 322
           T R+  SV +  S AN  RH RP PA
Sbjct: 380 TDRLLYSV-LPISVANELRHSRPVPA 404


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 245 TIRIQPSVRISASSANRGRHRRPAPA 322
           T R+  SV +  S AN  RH RP PA
Sbjct: 380 TDRLLYSV-LPISVANELRHSRPVPA 404


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -2

Query: 336 QPETAAGAGRRCRPRFALEADIRTDG*MRIVSPRCRITI 220
           QP  A  A     PR+ ++   R     + +  RCR+ +
Sbjct: 38  QPLEARSADLVPEPRYIIDVPPRCPPGSKFIKNRCRVIV 76


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = -1

Query: 499 CSGIGGCCCWP 467
           C   GG C WP
Sbjct: 135 CLSTGGSCYWP 145


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 367 SSR*PKKIQTMKKKFVTSSLKQRNTNVTARCKNLANNS 480
           +S+ PK I ++   +  S+    N N      N  NN+
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNN 112


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 367 SSR*PKKIQTMKKKFVTSSLKQRNTNVTARCKNLANNS 480
           +S+ PK I ++   +  S+    N N      N  NN+
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,818
Number of Sequences: 438
Number of extensions: 1868
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)