Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0646
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low...    34   0.046
At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low...    34   0.046
At4g37440.1 68417.m05299 expressed protein                             29   2.3  
At5g59510.1 68418.m07458 expressed protein                             28   4.0  
At1g29220.1 68414.m03574 transcriptional regulator family protei...    28   4.0  
At1g60220.1 68414.m06782 Ulp1 protease family protein contains P...    27   5.3  
At5g61410.2 68418.m07705 ribulose-phosphate 3-epimerase, chlorop...    27   9.3  
At5g61410.1 68418.m07704 ribulose-phosphate 3-epimerase, chlorop...    27   9.3  
At1g75150.1 68414.m08729 expressed protein ; expression supporte...    27   9.3  

>At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low
           similarity to DNA polymerase eta [Homo sapiens]
           GI:11463971; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 672

 Score = 34.3 bits (75), Expect = 0.046
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 273 YQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKED-SDYEEKVRNFLAETTQYKRN 449
           Y      A+ + A  PP S   ID E+     L M +ED  D++E VRN++      +R+
Sbjct: 123 YLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRD 182

Query: 450 R 452
           +
Sbjct: 183 K 183


>At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low
           similarity to DNA polymerase eta [Homo sapiens]
           GI:11463971; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 588

 Score = 34.3 bits (75), Expect = 0.046
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 273 YQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKED-SDYEEKVRNFLAETTQYKRN 449
           Y      A+ + A  PP S   ID E+     L M +ED  D++E VRN++      +R+
Sbjct: 39  YLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRD 98

Query: 450 R 452
           +
Sbjct: 99  K 99


>At4g37440.1 68417.m05299 expressed protein
          Length = 471

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 363 KFLEMTKEDSDYEEKVRNFLAETTQYKRNRKMQELGQQQQPPMP 494
           K+ E+  +   Y+++V  +         N K +ELG +  PP+P
Sbjct: 154 KYKELQNQAQKYDKEVEEYYQAKKLELENVKSEELGVKALPPLP 197


>At5g59510.1 68418.m07458 expressed protein
          Length = 144

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 361 ASSSR*PKKIQTMKKKFVTSSLKQRNTNVTARCKNLA 471
           + S++ P    +  K  ++ SL Q+  +VT +C+N+A
Sbjct: 81  SGSTKCPVDTSSTSKCSISRSLSQKGASVTRKCRNMA 117


>At1g29220.1 68414.m03574 transcriptional regulator family protein
           similar to Transcriptional regulator protein HCNGP
           (Swiss-Prot:Q02614) [Mus musculus]
          Length = 351

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 315 PPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRN 416
           P PR +   + + K+ KFL + K    +  +VRN
Sbjct: 135 PRPRERCSEELQRKIDKFLSLKKMGKSFNSEVRN 168


>At1g60220.1 68414.m06782 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 604

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 279 PPVQTADDIAAQPPPRSQADIDYELKVRK-FLEMTKEDSDYEEKVRNFLAETTQYKRNRK 455
           PP   +DD    P   +  D+D +L+ +K  L +     D  EK+R  +A+  + K+ R 
Sbjct: 49  PPTFFSDDQTDSPKLLTDRDLDEQLERKKAILTLGPGLPDKGEKIRLKIADLEEEKQRRV 108

Query: 456 MQ 461
           ++
Sbjct: 109 LE 110


>At5g61410.2 68418.m07705 ribulose-phosphate 3-epimerase,
           chloroplast, putative / pentose-5-phosphate 3-epimerase,
           putative strong similarity to SP|Q43157
           Ribulose-phosphate 3-epimerase, chloroplast precursor
           (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE)
           (RPE) (R5P3E) {Spinacia oleracea}; contains Pfam profile
           PF00834: Ribulose-phosphate 3 epimerase family
          Length = 281

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 98  HLHHQIRVIQKVLGRRSVVLNPTTKGSAL 184
           HLH  +  I+ +  +  VVLNP T  SA+
Sbjct: 153 HLHRTVNQIKSLGAKAGVVLNPGTPLSAI 181


>At5g61410.1 68418.m07704 ribulose-phosphate 3-epimerase,
           chloroplast, putative / pentose-5-phosphate 3-epimerase,
           putative strong similarity to SP|Q43157
           Ribulose-phosphate 3-epimerase, chloroplast precursor
           (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE)
           (RPE) (R5P3E) {Spinacia oleracea}; contains Pfam profile
           PF00834: Ribulose-phosphate 3 epimerase family
          Length = 281

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 98  HLHHQIRVIQKVLGRRSVVLNPTTKGSAL 184
           HLH  +  I+ +  +  VVLNP T  SA+
Sbjct: 153 HLHRTVNQIKSLGAKAGVVLNPGTPLSAI 181


>At1g75150.1 68414.m08729 expressed protein ; expression supported
           by MPSS
          Length = 753

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 267 YGYQPPV-QTADDIAAQPPPR-SQADIDYELKVRKFLEMTKEDSDYEEKVRNF 419
           + Y P   QT +D+  +     S ++   E++V +  E  KED D+E  V  F
Sbjct: 92  FDYVPEFNQTIEDLGEKSGSEISDSETRDEIRVSETTESEKEDPDFETTVHEF 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,325,834
Number of Sequences: 28952
Number of extensions: 151746
Number of successful extensions: 633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)