Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0644
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid sphingom...    27   8.7  

>Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1058.6 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 145 CVTLLGEGATCKIYSKELGETPSAVCKE 228
           CV   G+G+T  ++S  +G+  SA+C E
Sbjct: 137 CVWGQGDGSTMPVFSTSVGKIGSAICWE 164


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 97  TEHRXRHAGKXACCPACVTLLGEGA 171
           T HR +H    ACCP C  ++   A
Sbjct: 149 TWHRVKHVVFVACCPPCCCIIQRSA 173


>AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid
           sphingomyelinase protein 3 protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 223 KEPLKCIKRV*LSLCSRFH*QENISLQYFYHDLFEI*FVYGIKLIII 363
           K+  +C+  + + +C  FH ++N    +   D F   F+Y IK I++
Sbjct: 38  KKTEECVMEIAVFICETFHIEDNDVCNFIISD-FSDEFMYVIKQILV 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,341,256
Number of Sequences: 27780
Number of extensions: 285116
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)