Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0643
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 144 4e-36
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 82 3e-17
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 71 5e-14
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 65 4e-12
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 33 0.015
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 2.3
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 3.9
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 5.2
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 25 5.2
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 5.2
SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp... 24 9.1
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 24 9.1
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 24 9.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 144 bits (349), Expect = 4e-36
Identities = 66/111 (59%), Positives = 74/111 (66%)
Frame = +1
Query: 46 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 225
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 226 PRAILVDLEPGQWTLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378
PRA+LVDLEPG + G WAKGHYTEGAE
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAE 111
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 81.8 bits (193), Expect = 3e-17
Identities = 34/69 (49%), Positives = 51/69 (73%)
Frame = +1
Query: 49 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 228
REI+ +QAGQCGNQIG++FW+ + EHGI P GT + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 229 RAILVDLEP 255
RAIL+DLEP
Sbjct: 63 RAILIDLEP 71
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 71.3 bits (167), Expect = 5e-14
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Frame = +1
Query: 46 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLE--RINVYYNEATGGK 219
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 220 YVPRAILVDLEPGQWTLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378
YVPR+I VDLEP L G + +A+GHYT G E
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKE 113
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 64.9 bits (151), Expect = 4e-12
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Frame = +1
Query: 46 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG------TYHGDSDLQLERINVYYNEA 207
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 208 TGGKYVPRAILVDLEPGQWTLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378
GK+VPR+I VDLEP + G + +A+GHYT G E
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKE 117
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 33.1 bits (72), Expect = 0.015
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 98 LSSGKLYPMSMASIRRERITETPTSSWSASTCTITRRPEES 220
L GKL P+ A +++ ++ TS++S +T +T+ EES
Sbjct: 401 LEGGKLLPLPTAPVQQSKVQINGTSAYSTATDAVTKDAEES 441
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 85 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERI 186
N++G EV++++ +DPT + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 3.9
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 140 RRERITETPTSSWSASTCTITRR-PEESTXLGLSLWTWSRDNGLCTLXTIRSDLPS 304
++E+I + TS+W+ S C T E+ L T ++D G+ IR D PS
Sbjct: 35 KKEKIRDG-TSTWTCSICEATNHIDEKGDILDYRPPTPTQDKGVGPFYAIR-DFPS 88
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 24.6 bits (51), Expect = 5.2
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 64 IQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEAT 210
I G+ + A + + D I P G Y+ ++ E + +YY AT
Sbjct: 578 ILQGKIEVTVNATTFRMKKDGVFIVPRGNYYSIKNIGKEAVRLYYTHAT 626
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 24.6 bits (51), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 283 HSVRSSVRTTLSLGXRVLATTW 348
HSVR ++ ++ L RV AT W
Sbjct: 246 HSVRKAIPDSMPLFYRVTATDW 267
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 5.2
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 197 ITRRPEESTXLGLSLWTWS--RDNGLCTLXTIR-SDLPSGQLCLWAI 328
IT +PE+ GL L TWS RD + T+ DL S + L +I
Sbjct: 222 ITCQPEDMNNNGLQLRTWSTGRDIQIAVCLTLSDEDLASFAISLSSI 268
>SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit
Mrp10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 88
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 287 RSDLPSGQLCLWAIGCWQQLGLRVTT 364
++ +P GQ +GCWQ G + T
Sbjct: 25 KNTIPCGQEMAALLGCWQNHGGQTDT 50
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -2
Query: 267 SPLSRLQVHKDSPRXVLSSGRLVIVHVDALQLEVGVSV 154
SP++ + ++DS + S+GR ++H+DA Q + +V
Sbjct: 164 SPVNFEKENQDS-NVLFSTGRTSVLHIDAEQSQTNNTV 200
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 23.8 bits (49), Expect = 9.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 265 TLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378
TLYA + S + +S ++W KG +GA+
Sbjct: 539 TLYALSWAHSSKTKLNISYSVEWSKSSWLKGPIEKGAQ 576
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,627
Number of Sequences: 5004
Number of extensions: 33073
Number of successful extensions: 91
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -