BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0643 (379 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 144 4e-36 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 82 3e-17 SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 71 5e-14 SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 65 4e-12 SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 33 0.015 SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 2.3 SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 3.9 SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 5.2 SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 25 5.2 SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 5.2 SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp... 24 9.1 SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 24 9.1 SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 24 9.1 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 144 bits (349), Expect = 4e-36 Identities = 66/111 (59%), Positives = 74/111 (66%) Frame = +1 Query: 46 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 225 MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA GGKYV Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60 Query: 226 PRAILVDLEPGQWTLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378 PRA+LVDLEPG + G WAKGHYTEGAE Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAE 111 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 81.8 bits (193), Expect = 3e-17 Identities = 34/69 (49%), Positives = 51/69 (73%) Frame = +1 Query: 49 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 228 REI+ +QAGQCGNQIG++FW+ + EHGI P GT + ++R +V++ ++ +Y+P Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62 Query: 229 RAILVDLEP 255 RAIL+DLEP Sbjct: 63 RAILIDLEP 71 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 71.3 bits (167), Expect = 5e-14 Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 2/113 (1%) Frame = +1 Query: 46 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLE--RINVYYNEATGGK 219 MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60 Query: 220 YVPRAILVDLEPGQWTLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378 YVPR+I VDLEP L G + +A+GHYT G E Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKE 113 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 64.9 bits (151), Expect = 4e-12 Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Frame = +1 Query: 46 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG------TYHGDSDLQLERINVYYNEA 207 MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60 Query: 208 TGGKYVPRAILVDLEPGQWTLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378 GK+VPR+I VDLEP + G + +A+GHYT G E Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKE 117 >SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pombe|chr 1|||Manual Length = 508 Score = 33.1 bits (72), Expect = 0.015 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = +2 Query: 98 LSSGKLYPMSMASIRRERITETPTSSWSASTCTITRRPEES 220 L GKL P+ A +++ ++ TS++S +T +T+ EES Sbjct: 401 LEGGKLLPLPTAPVQQSKVQINGTSAYSTATDAVTKDAEES 441 >SPBC19G7.16 |iws1||transcription elongation factor complex subunit Iws1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 428 Score = 25.8 bits (54), Expect = 2.3 Identities = 10/34 (29%), Positives = 21/34 (61%) Frame = +1 Query: 85 NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERI 186 N++G EV++++ +DPT + DLQ++ + Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166 >SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 615 Score = 25.0 bits (52), Expect = 3.9 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +2 Query: 140 RRERITETPTSSWSASTCTITRR-PEESTXLGLSLWTWSRDNGLCTLXTIRSDLPS 304 ++E+I + TS+W+ S C T E+ L T ++D G+ IR D PS Sbjct: 35 KKEKIRDG-TSTWTCSICEATNHIDEKGDILDYRPPTPTQDKGVGPFYAIR-DFPS 88 >SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr 2|||Manual Length = 643 Score = 24.6 bits (51), Expect = 5.2 Identities = 13/49 (26%), Positives = 22/49 (44%) Frame = +1 Query: 64 IQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEAT 210 I G+ + A + + D I P G Y+ ++ E + +YY AT Sbjct: 578 ILQGKIEVTVNATTFRMKKDGVFIVPRGNYYSIKNIGKEAVRLYYTHAT 626 >SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosaccharomyces pombe|chr 2|||Manual Length = 395 Score = 24.6 bits (51), Expect = 5.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +1 Query: 283 HSVRSSVRTTLSLGXRVLATTW 348 HSVR ++ ++ L RV AT W Sbjct: 246 HSVRKAIPDSMPLFYRVTATDW 267 >SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schizosaccharomyces pombe|chr 2|||Manual Length = 926 Score = 24.6 bits (51), Expect = 5.2 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Frame = +2 Query: 197 ITRRPEESTXLGLSLWTWS--RDNGLCTLXTIR-SDLPSGQLCLWAI 328 IT +PE+ GL L TWS RD + T+ DL S + L +I Sbjct: 222 ITCQPEDMNNNGLQLRTWSTGRDIQIAVCLTLSDEDLASFAISLSSI 268 >SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp10|Schizosaccharomyces pombe|chr 1|||Manual Length = 88 Score = 23.8 bits (49), Expect = 9.1 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = +2 Query: 287 RSDLPSGQLCLWAIGCWQQLGLRVTT 364 ++ +P GQ +GCWQ G + T Sbjct: 25 KNTIPCGQEMAALLGCWQNHGGQTDT 50 >SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit Ctf18|Schizosaccharomyces pombe|chr 2|||Manual Length = 960 Score = 23.8 bits (49), Expect = 9.1 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = -2 Query: 267 SPLSRLQVHKDSPRXVLSSGRLVIVHVDALQLEVGVSV 154 SP++ + ++DS + S+GR ++H+DA Q + +V Sbjct: 164 SPVNFEKENQDS-NVLFSTGRTSVLHIDAEQSQTNNTV 200 >SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 764 Score = 23.8 bits (49), Expect = 9.1 Identities = 11/38 (28%), Positives = 18/38 (47%) Frame = +1 Query: 265 TLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378 TLYA + S + +S ++W KG +GA+ Sbjct: 539 TLYALSWAHSSKTKLNISYSVEWSKSSWLKGPIEKGAQ 576 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,644,627 Number of Sequences: 5004 Number of extensions: 33073 Number of successful extensions: 91 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 83 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 122233080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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