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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0643
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   144   4e-36
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    82   3e-17
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    71   5e-14
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    65   4e-12
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    33   0.015
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   2.3  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   3.9  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   5.2  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    25   5.2  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   5.2  
SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp...    24   9.1  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    24   9.1  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    24   9.1  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  144 bits (349), Expect = 4e-36
 Identities = 66/111 (59%), Positives = 74/111 (66%)
 Frame = +1

Query: 46  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 225
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 226 PRAILVDLEPGQWTLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378
           PRA+LVDLEPG                  +  G       WAKGHYTEGAE
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAE 111


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 81.8 bits (193), Expect = 3e-17
 Identities = 34/69 (49%), Positives = 51/69 (73%)
 Frame = +1

Query: 49  REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 228
           REI+ +QAGQCGNQIG++FW+ +  EHGI P GT    +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 229 RAILVDLEP 255
           RAIL+DLEP
Sbjct: 63  RAILIDLEP 71


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 71.3 bits (167), Expect = 5e-14
 Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
 Frame = +1

Query: 46  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLE--RINVYYNEATGGK 219
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 220 YVPRAILVDLEPGQWTLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378
           YVPR+I VDLEP                   L  G    +  +A+GHYT G E
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKE 113


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 64.9 bits (151), Expect = 4e-12
 Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
 Frame = +1

Query: 46  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG------TYHGDSDLQLERINVYYNEA 207
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 208 TGGKYVPRAILVDLEPGQWTLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378
             GK+VPR+I VDLEP                   +  G    +  +A+GHYT G E
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKE 117


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 33.1 bits (72), Expect = 0.015
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 98  LSSGKLYPMSMASIRRERITETPTSSWSASTCTITRRPEES 220
           L  GKL P+  A +++ ++    TS++S +T  +T+  EES
Sbjct: 401 LEGGKLLPLPTAPVQQSKVQINGTSAYSTATDAVTKDAEES 441


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 85  NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERI 186
           N++G    EV++++  +DPT     + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 140 RRERITETPTSSWSASTCTITRR-PEESTXLGLSLWTWSRDNGLCTLXTIRSDLPS 304
           ++E+I +  TS+W+ S C  T    E+   L     T ++D G+     IR D PS
Sbjct: 35  KKEKIRDG-TSTWTCSICEATNHIDEKGDILDYRPPTPTQDKGVGPFYAIR-DFPS 88


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 64  IQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEAT 210
           I  G+    + A  + +  D   I P G Y+   ++  E + +YY  AT
Sbjct: 578 ILQGKIEVTVNATTFRMKKDGVFIVPRGNYYSIKNIGKEAVRLYYTHAT 626


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 283 HSVRSSVRTTLSLGXRVLATTW 348
           HSVR ++  ++ L  RV AT W
Sbjct: 246 HSVRKAIPDSMPLFYRVTATDW 267


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 197 ITRRPEESTXLGLSLWTWS--RDNGLCTLXTIR-SDLPSGQLCLWAI 328
           IT +PE+    GL L TWS  RD  +    T+   DL S  + L +I
Sbjct: 222 ITCQPEDMNNNGLQLRTWSTGRDIQIAVCLTLSDEDLASFAISLSSI 268


>SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit
           Mrp10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 88

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 287 RSDLPSGQLCLWAIGCWQQLGLRVTT 364
           ++ +P GQ     +GCWQ  G +  T
Sbjct: 25  KNTIPCGQEMAALLGCWQNHGGQTDT 50


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 267 SPLSRLQVHKDSPRXVLSSGRLVIVHVDALQLEVGVSV 154
           SP++  + ++DS   + S+GR  ++H+DA Q +   +V
Sbjct: 164 SPVNFEKENQDS-NVLFSTGRTSVLHIDAEQSQTNNTV 200


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 265 TLYAXDHSVRSSVRTTLSLGXRVLATTWAKGHYTEGAE 378
           TLYA   +  S  +  +S       ++W KG   +GA+
Sbjct: 539 TLYALSWAHSSKTKLNISYSVEWSKSSWLKGPIEKGAQ 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,627
Number of Sequences: 5004
Number of extensions: 33073
Number of successful extensions: 91
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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