Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0642
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   7.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.7  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 159 KVLESSSLGHITAAAK*ASPLAGCPGCIVSPGP 61
           K  E ++L     AA  ASP +G P  ++SP P
Sbjct: 294 KAQEEANLYAAKKAAG-ASPYSGTPTPMMSPAP 325


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
 Frame = -3

Query: 339 PGXRHGVVDRELLSRLQGRVG-------PXHLGVYPAMALSPSTHSWRARASVALSFNMS 181
           P    G+   +L S+  G +G       P   G YP   LSP      A       + +S
Sbjct: 138 PPAHMGIPPYQLDSKTAGSMGLTRPPMYPFPAGQYPYPILSPEMSQVAASWHTPSMYPLS 197

Query: 180 PDAQF 166
           P A F
Sbjct: 198 PGAGF 202


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
 Frame = -3

Query: 339 PGXRHGVVDRELLSRLQGRVG-------PXHLGVYPAMALSPSTHSWRARASVALSFNMS 181
           P    G+   +L S+  G +G       P   G YP   LSP      A       + +S
Sbjct: 30  PPAHMGIPPYQLDSKTAGSMGLTRPPMYPFPAGQYPYPILSPEMSQVAASWHTPSMYPLS 89

Query: 180 PDAQF 166
           P A F
Sbjct: 90  PGAGF 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,797
Number of Sequences: 336
Number of extensions: 2451
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)