Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0642
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 28 1.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.0
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 27 2.0
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 2.6
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 3.4
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 26 4.5
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 25 7.9
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 7.9
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 7.9
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 7.9
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 268 PWCVSSNGPEPVDPLLARAGVGSSQL 191
PW SSN PV PL + +G+S +
Sbjct: 11 PWASSSNWGSPVKPLNYKTAIGNSSI 36
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 286 PLQPREQLAVHDAMAXARQQLQATELSDAALARCIES 396
P+ EQL VHD + L+++E A RC+ S
Sbjct: 1760 PILDSEQLVVHDFLEELFSSLKSSEEDFALRTRCVTS 1796
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 113 LAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEW 229
L + I S ED+ ++C S M KLR+T + W
Sbjct: 1489 LVQSAIRESSEDAIALAVDCDSEAMEKLRSTTTLDEESW 1527
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/70 (24%), Positives = 27/70 (38%)
Frame = +1
Query: 289 LQPREQLAVHDAMAXARQQLQATELSDAALARCIESSDSPFPHTDPDLLLLKATSAASMQ 468
L L H + + + L+ ELS + +S P + D +LLL A
Sbjct: 612 LHSLSHLLHHPSTKRSHKMLEGKELSQELEDLSLHNSPDPIIYKDELVLLLPPREIAKQL 671
Query: 469 CLLQCLGVLH 498
C+L+ H
Sbjct: 672 CILEFQSFSH 681
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 325 WRRGPRAALSAAGAGWPXSPWCVSSNGPEPVDPLLARAGVGSS 197
W+R +A+ AGAG +P S+ G L+RA SS
Sbjct: 181 WKRMMKASSGEAGAGNVITPGVTSTTGAPSGKASLSRAASNSS 223
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 119 AAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAGY 259
+AV ++ KTF + + +++L AT +EWV LR+ GY
Sbjct: 64 SAVAYYKEKSPKTFFLYL-NEKIIRLIATSNEDAEEWVHVLRSTTGY 109
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 163 GEGLGVFVAWAYHCCS 116
G + VF AWA +CCS
Sbjct: 138 GAAVRVFPAWAAYCCS 153
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 128 ICPSDEDSKTFTINCASGDML 190
+CPS S F++NC +G M+
Sbjct: 62 LCPSLVGSMAFSMNCGAGGMV 82
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 295 AAGAGWPXSPWCVSSNGPEPVDPLLARAG 209
A G +P W + + PE VD + R G
Sbjct: 346 ARGLDFPAVDWVIQLDAPEDVDTYIHRVG 374
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 197 RATDARARQEWVDGLRAIAGY 259
R D A +EW + L+A+AG+
Sbjct: 88 RTEDDIANEEWEENLKAVAGF 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,735
Number of Sequences: 5004
Number of extensions: 37608
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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