Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0642
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 32 0.001
06_03_0226 - 18420293-18420697 33 0.22
08_02_0699 + 20155509-20156189 33 0.29
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 32 0.50
12_02_0230 + 15973390-15974645,16002878-16003097 31 1.2
05_05_0060 - 22015440-22015481,22015572-22015709,22016704-220167... 30 1.5
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 30 1.5
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 30 1.5
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 29 2.7
08_01_0756 - 7161089-7161452,7161589-7161995 29 3.5
07_03_1616 - 28167872-28168303 29 4.7
12_02_0528 + 20059613-20061472 28 6.2
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 28 6.2
08_02_1462 + 27308792-27308924,27309711-27309778,27309854-273101... 28 8.2
04_04_0825 + 28443961-28444099,28444527-28444603,28444710-284447... 28 8.2
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 31.9 bits (69), Expect(2) = 0.001
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +2
Query: 83 PGQPARGEAHLAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAGYT 262
P +P GE HL + + S D + F+I + L LRA R WV+ L+A
Sbjct: 166 PRKPI-GEIHLKVSSVRESRSDDRRFSIFSGT-KRLHLRAETREDRAAWVEALQATKEMF 223
Query: 263 PR 268
PR
Sbjct: 224 PR 225
Score = 27.9 bits (59), Expect(2) = 0.001
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 8 RWFAVDPETGVLSYYLYDGPGDTIQPGQPARG 103
RWFA+ GVLSYY GP + + RG
Sbjct: 106 RWFAL--HDGVLSYYKIHGPDRIVLSRETERG 135
>06_03_0226 - 18420293-18420697
Length = 134
Score = 33.1 bits (72), Expect = 0.22
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = -2
Query: 358 RSLVAAAWPTP----WRRGPRAALSAAGAGWPXSPWCVSSNGPEPVDPLLARAGVGSSQL 191
R + AAA PT WRRGPR A SAAG G V E + + G S++
Sbjct: 36 RVVAAAATPTTSTCGWRRGPRPAQSAAGDGVAAGEGDVYVEELEMMKMMGIPVGFDSTKG 95
Query: 190 QHVAGRAVYG 161
+HV V G
Sbjct: 96 KHVPDADVSG 105
>08_02_0699 + 20155509-20156189
Length = 226
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 527 DGERGVRCWRCSTPRHCSRHCM 462
D ER RCWRC P H + +CM
Sbjct: 204 DMERHGRCWRCGKPGHHTSNCM 225
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 31.9 bits (69), Expect = 0.50
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 334 PTPWRRGPRAALSAAGAGWPXSPWCVSSNGPEPVD--PLLARAGVG 203
PTP RR P AA +AA A P P+ VSS P P L RA G
Sbjct: 20 PTPRRRLPFAAAAAAAAA-PPRPFLVSSPPPPPAPRARLARRAAAG 64
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 79 TAWTAGQGGGSFSCSSDMPKRRRLQDLHHKLRVRRHVEA 195
TA+T G G SC S+ P++ L L H R RR EA
Sbjct: 414 TAFTTS-GNGDLSCPSNFPRKEAL--LRHAFRARRFPEA 449
>05_05_0060 -
22015440-22015481,22015572-22015709,22016704-22016799,
22016911-22017135
Length = 166
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 91 AGQGGGSFSCSSDMPKRRRLQDLHHK 168
AG+GG +D+P+ RRL+DL K
Sbjct: 48 AGEGGAEADADADLPELRRLRDLEAK 73
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/70 (37%), Positives = 31/70 (44%)
Frame = -2
Query: 367 H*VRSLVAAAWPTPWRRGPRAALSAAGAGWPXSPWCVSSNGPEPVDPLLARAGVGSSQLQ 188
H + AA + RGPR A SA A SPW S G +P + +R VG S
Sbjct: 7 HLAACVARAAASSSRLRGPRPAASALVAPLLASPW-EPSGGGQPHWLVPSRGHVGHSH-H 64
Query: 187 HVAGRAVYGE 158
H G V GE
Sbjct: 65 HHHGEEVGGE 74
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -2
Query: 334 PTPWRRGPRAALSAAGAGWPXSPWCVSSNGPEPVDPLLARAGVGSSQ 194
P P RR A+ +AA G P P SS+ P P P A G G Q
Sbjct: 36 PLPARRWRVASSAAASGGSPDLPSSSSSSSPPPT-PAAASFGSGDEQ 81
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = -2
Query: 280 WPXSPWCVSSNGPEPVDPLLARAGVGSSQLQHVAGRAVYGEGLGVFVAWAYHC 122
W S WC P P RAG+ AG + G+ V W C
Sbjct: 160 WSPSRWCCPRGSRIPRSPWQIRAGIDKQGAAADAGELLSGQVKAVRKPWRSRC 212
>08_01_0756 - 7161089-7161452,7161589-7161995
Length = 256
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = -2
Query: 421 PCEGRENLKTLCSARGPRH*VRSLVAAAWPTPWRRG--PRAALSAAGAGWPXSPWC-VSS 251
PC + L A+G +RS P R G P A+ SA+ WP W ++
Sbjct: 2 PCNRHQELIRSVHAKGESQRLRSGFGRTLDWPNRPGFWPAASSSASIISWPKCGWIGLNK 61
Query: 250 NGPEPVDPLLA 218
+P+ LLA
Sbjct: 62 GSADPIWALLA 72
>07_03_1616 - 28167872-28168303
Length = 143
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 307 AALSAAGAGWPXSPWCVSSNGPEPVDPLLAR--AGVGSSQLQHVAGRAV 167
AAL+ +GA P SS P P PLLAR + SS+L R +
Sbjct: 29 AALAGSGALLPRLDGVPSSPSPSPAPPLLARSFSATSSSRLPREFSRTL 77
>12_02_0528 + 20059613-20061472
Length = 619
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = -2
Query: 307 AALSAAGAGWPX-----SPWCVSSNGPEPVDPLLARAGVGS 200
A L A WP +PW + G EP+ PL+ A GS
Sbjct: 25 AGLGELLAAWPSLADEPAPWYTPARGAEPLTPLMVAAVYGS 65
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = -2
Query: 331 TPWRRGPRAALSAAG---AGWPXSPWCVSSNGPEPVDPLLARAGVGSSQLQHVAGR 173
TPWR RA LS A AG P + NGP VDP A ++ V GR
Sbjct: 488 TPWRL--RARLSHARPSPAGRGLLPLAMRGNGPTHVDPAEATVADKVGLVEAVCGR 541
>08_02_1462 +
27308792-27308924,27309711-27309778,27309854-27310159,
27310168-27310839
Length = 392
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 279 GPXHLGVYPAMALSPSTHSWRARASVALSFNMSPDAQF 166
G HL V +AL P WR R +N+ D +F
Sbjct: 96 GVTHLAVGDRVALEPGISCWRCRHCKGGRYNLCEDMKF 133
>04_04_0825 +
28443961-28444099,28444527-28444603,28444710-28444758,
28445283-28445367,28445506-28445755,28447053-28447373
Length = 306
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -3
Query: 201 ALSFNMSPDAQFMVKVLESSSLGH--ITAAAK*ASPLAGCPGCIVSPG 64
+LS ++ PD + M + S S ++++++ S +G GC+V+PG
Sbjct: 247 SLSLSLGPDPKCMPAIASSPSESSCILSSSSRSFSDCSGNSGCLVAPG 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,311
Number of Sequences: 37544
Number of extensions: 350656
Number of successful extensions: 1433
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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