Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0642
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)                38   0.006
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)           29   4.8  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.3  
SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)                 28   6.3  
SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)               28   8.4  

>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
          Length = 926

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 27/80 (33%), Positives = 38/80 (47%)
 Frame = +2

Query: 2   QQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASG 181
           Q+RWF +    G+LSYY      +  +     RG  +LA A I    ED+ +F I+    
Sbjct: 331 QRRWFVLS--NGLLSYYR-----NQAEMAHTCRGTINLAGAFI--DTEDACSFVISNGGT 381

Query: 182 DMLKLRATDARARQEWVDGL 241
            +  LRA+    RQ WV  L
Sbjct: 382 QVFHLRASTEVERQRWVTAL 401


>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
 Frame = +2

Query: 2   QQRWFAVDPETGVLSYYLYDGPGDTIQP------GQPARGEAHLAAAVICPSDEDSKTFT 163
           Q+RW  +  E G+LSY+LY G   T  P       Q A       + V+C +  ++    
Sbjct: 280 QRRWCVL--EGGMLSYWLYPGDETTKAPLGSLDLSQCASSHVTTVSRVLC-ARPNTMELV 336

Query: 164 INCASGDMLK-LRATDARA-RQEWVDGL 241
           IN    + +K L A D +A +  W+D L
Sbjct: 337 INKGDNNSIKYLLAADTKADKVTWLDSL 364


>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 280 NPPLQPR-EQLAVHDAMAXARQQLQATELSDAALARCIESSDSPFPHTDPD 429
           NP L+ R E++A+   M+  ++ L     +D     C + SDS    TDP+
Sbjct: 590 NPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPN 640


>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
          Length = 514

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 122 AVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIA 253
           A +C   E  K + ++C   +M KL +   + +  W+DG+R +A
Sbjct: 438 AKLCNRSEKRKGYWLDCVR-EMAKLCSRSEKRKGYWLDGVREMA 480


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 122  AVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIA 253
            A +C   E  K + ++C   +M KL +   + +  W+DG+R +A
Sbjct: 5263 AKLCNRSEKRKGYWLDCVR-EMAKLCSKSEKRKGYWLDGVREMA 5305


>SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +2

Query: 2   QQRWFAVDPETGVLSYYLY-DGPGDT-IQPGQPARGEAHLAAAVICPSDEDSKTFTINCA 175
           Q+RWF ++   GVL Y++Y D  G T IQ G       H    +     +  +TF+I   
Sbjct: 21  QRRWFVLN-SAGVLEYFIYDDSHGATDIQVGNI---NVHDCTNIFNGESDTGETFSIGLK 76

Query: 176 SGDM-LKLRATDARARQEW 229
           S ++   L+A +      W
Sbjct: 77  SENVNYYLKAENRLEMDNW 95


>SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)
          Length = 587

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 197 RATDARARQEWVDGLRAIAGYTP 265
           RA + RA Q+W   ++ +AG TP
Sbjct: 141 RAAETRATQQWWSAVKPVAGMTP 163


>SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)
          Length = 376

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 319 RGPRAALSAAG-AGWPXSPWCVSSNGPEPVDPLLARAGVGSSQLQ 188
           RG R  LS    A  P  PW      P PVD   AR+  G  QL+
Sbjct: 116 RGQRPNLSPPWIAPEPVPPWTKLEQDPPPVDSARARSPRGRRQLK 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,079,916
Number of Sequences: 59808
Number of extensions: 336430
Number of successful extensions: 1053
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)