Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0642
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol bin...    40   0.001
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    29   2.4  
Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol
           binding protein (osbp)related protein 4, isoform a
           protein.
          Length = 676

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = +2

Query: 2   QQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASG 181
           Q RWF ++ +T  L YY      + +  GQ  RG+  L  AV+    E++  FTI    G
Sbjct: 16  QYRWFKIENDT--LLYYT---SREKMLKGQQ-RGQIRLTGAVVGIDGENNSLFTIT-VEG 68

Query: 182 DMLKLRATDARARQEWV----DGLRAIAGY 259
               ++  D R R +WV    + +RA +GY
Sbjct: 69  KTFHMQGRDLRERNQWVRILENSIRASSGY 98


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -3

Query: 303 LSRLQG-RVGPXHLG-VYPAMALSPSTHSWRARASVALSFNMSPDAQFMVKVLESSSLGH 130
           +S  QG ++ P  L  V  A  L+   H  R      + + M+  A  +V +L S++  H
Sbjct: 180 VSTTQGVKLEPNELETVMDACNLAAQLHVNRLEMHQLVEWRMALIAPNLVALLGSTTTAH 239

Query: 129 ITAAAK*ASPLAGCPGCIV 73
           + + A   SPLA  P C V
Sbjct: 240 LVSQAGGLSPLATMPSCNV 258


>Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical
           protein F16H6.3 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 560 VLMFVVGMLGGDGERGVRCW 501
           VL+ VV   GG+G R VRCW
Sbjct: 60  VLLGVVPTAGGNGLRPVRCW 79


>U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical
           protein F47G3.1 protein.
          Length = 886

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 297 RLQGRVGPXHLGVYPAMALSPSTHSWRARASVALS 193
           RLQ    P  +G YP   +S +T  W    + +LS
Sbjct: 740 RLQSIKNPNQIGCYPVKKVSEATFRWVVYTNTSLS 774


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,854,120
Number of Sequences: 27780
Number of extensions: 234733
Number of successful extensions: 683
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)