Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0642
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77730.1 68414.m09050 pleckstrin homology (PH) domain-contain... 43 2e-04
At2g31020.1 68415.m03782 oxysterol-binding family protein simila... 36 3e-04
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 36 6e-04
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 36 6e-04
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 36 6e-04
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 30 1.3
At4g22530.1 68417.m03251 embryo-abundant protein-related similar... 30 1.3
At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-contain... 29 3.9
At1g03920.1 68414.m00377 protein kinase, putative contains prote... 29 3.9
At5g66750.1 68418.m08414 SNF2 domain-containing protein / helica... 28 5.2
At4g34170.1 68417.m04848 kelch repeat-containing F-box family pr... 28 6.8
At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2) ident... 28 6.8
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 27 9.0
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica... 27 9.0
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica... 27 9.0
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica... 27 9.0
>At1g77730.1 68414.m09050 pleckstrin homology (PH) domain-containing
protein similar to SP|P16258 Oxysterol-binding protein 1
{Oryctolagus cuniculus}; contains Pfam profile PF00169:
PH domain
Length = 265
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +2
Query: 68 GDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRA 247
GD PG+P G+ HL + I S D K FT+ + L LRA + R W++ L+A
Sbjct: 119 GDVHSPGKPL-GQIHLKVSSIGQSISDGKRFTVFTGTKS-LHLRAATSEDRASWIEALKA 176
Query: 248 IAGYTPR 268
+ PR
Sbjct: 177 VKETFPR 183
>At2g31020.1 68415.m03782 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 760
Score = 36.3 bits (80), Expect(2) = 3e-04
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 101 GEAHLAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIAGYTPR 268
GE HL + I S D K F+I + L LRA R+ W++ L+A+ PR
Sbjct: 153 GEVHLKVSSIRESRSDDKRFSIFTGT-KRLHLRAETREDREAWIEALQAVKDMFPR 207
Score = 25.4 bits (53), Expect(2) = 3e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 8 RWFAVDPETGVLSYYLYDGPGDTIQPGQPARG 103
RWF + + GVLSYY GP + + +G
Sbjct: 90 RWFVL--QDGVLSYYKIKGPDKIVVIHETEKG 119
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 35.5 bits (78), Expect(2) = 6e-04
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +2
Query: 62 GPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGL 241
G + Q + GE HL + + S D K F+I + L LRA R WV+ L
Sbjct: 172 GSSSSCQLRRKPFGEVHLKVSSVRESRSDDKRFSIFTGT-KRLHLRAETREDRTTWVEAL 230
Query: 242 RAIAGYTPR 268
+A+ PR
Sbjct: 231 QAVKDMFPR 239
Score = 25.0 bits (52), Expect(2) = 6e-04
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 8 RWFAVDPETGVLSYYLYDGP 67
RWF + + GVLSYY GP
Sbjct: 123 RWFVL--QDGVLSYYKIHGP 140
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 35.5 bits (78), Expect(2) = 6e-04
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +2
Query: 62 GPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGL 241
G + Q + GE HL + + S D K F+I + L LRA R WV+ L
Sbjct: 172 GSSSSCQLRRKPFGEVHLKVSSVRESRSDDKRFSIFTGT-KRLHLRAETREDRTTWVEAL 230
Query: 242 RAIAGYTPR 268
+A+ PR
Sbjct: 231 QAVKDMFPR 239
Score = 25.0 bits (52), Expect(2) = 6e-04
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 8 RWFAVDPETGVLSYYLYDGP 67
RWF + + GVLSYY GP
Sbjct: 123 RWFVL--QDGVLSYYKIHGP 140
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 35.5 bits (78), Expect(2) = 6e-04
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +2
Query: 62 GPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGL 241
G + Q + GE HL + + S D K F+I + L LRA R WV+ L
Sbjct: 172 GSSSSCQLRRKPFGEVHLKVSSVRESRSDDKRFSIFTGT-KRLHLRAETREDRTTWVEAL 230
Query: 242 RAIAGYTPR 268
+A+ PR
Sbjct: 231 QAVKDMFPR 239
Score = 25.0 bits (52), Expect(2) = 6e-04
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 8 RWFAVDPETGVLSYYLYDGP 67
RWF + + GVLSYY GP
Sbjct: 123 RWFVL--QDGVLSYYKIHGP 140
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 542 GMLGGDGERGVRCWRCSTPRHCSRHC 465
G GG G G C++C P H +R C
Sbjct: 119 GGRGGGGRGGSDCYKCGEPGHMARDC 144
>At4g22530.1 68417.m03251 embryo-abundant protein-related similar to
embryo-abundant protein [Picea glauca] GI:1350531
Length = 261
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 31 DWCSILLSL*WTRRHNTAWTAGQGGG 108
DW S L +L + RHN AW AG G G
Sbjct: 22 DWYSKLAAL--SHRHNLAWDAGTGNG 45
>At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-containing
protein / lipid-binding START domain-containing protein
contains Pfam profiles PF01852: START domain, PF00169:
PH domain
Length = 718
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 268 PWCVSSN---GPEPVDPLLARAGVGSSQLQHVAGRAVYGEGLGVFVAWAYHC 122
P CV ++ G + PL R G +Q+QH+ + G G G A+ HC
Sbjct: 324 PGCVRAHLESGGYNISPLKPRNGRPRTQVQHLIQIDLKGWGAGYLPAFQQHC 375
>At1g03920.1 68414.m00377 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 569
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 79 TAWTAGQGGGSFSCSSDMPKRRRLQDLHHKLRVRR 183
T AG GGGS S S+ PKR + + L H + RR
Sbjct: 296 TVGNAGSGGGSESVST-TPKRSQQEQLEHWQKNRR 329
>At5g66750.1 68418.m08414 SNF2 domain-containing protein / helicase
domain-containing protein similar to
proliferation-associated SNF2-like protein [Homo
sapiens] GI:8980660; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 764
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 244 GHCWIHTKVXXANPPLQPREQLAVHDAMAXARQQLQATELSDAALARCIESSD 402
G H + ++ PL+ + LA+ A +L T++SDA L R ++ SD
Sbjct: 674 GQGQFHQERAKSSTPLEEEDILALLKEDETAEDKLIQTDISDADLDRLLDRSD 726
>At4g34170.1 68417.m04848 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 293
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 319 RGPRAALSAAGAGWPXSPWCVSSN 248
R A +SA G GWP S +CV N
Sbjct: 209 RWSAADMSANGWGWPGSSYCVIEN 232
>At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2)
identical to SP|Q9M9W8 Phospholipase D p2 (EC 3.1.4.4)
(AtPLDp2) (Phospholipase D2 PHOX and PX containing
domain) (Phospholipase D zeta 2) (PLDzeta2) {Arabidopsis
thaliana}; similar to phospholipase D GB:BAA24577 from
[Rattus norvegicus]; contains Pfam profile: PF00614
phospholipase D, PF00169 PH domain, PF00787 PX domain
Length = 1046
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 23 DPETG-VLSYYLYDGPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASGDM-LKL 196
DP +G +L ++D G +Q + + + LA V + + F SGD ++L
Sbjct: 269 DPFSGKLLDIMVFDTLG--LQGTKESSEQPRLAEQV---KEHNPLRFGFKVTSGDRTVRL 323
Query: 197 RATDARARQEWVDGLRAIAGYTPR*XG 277
R T +R +EWV + Y+P G
Sbjct: 324 RTTSSRKVKEWVKAVDEAGCYSPHRFG 350
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 322 RRGPRAALSAAGAGWPXSPWCVSSNGPEPVDPLLARAGVGSS 197
RRGP + P SP+ S+ P V P+ G+G S
Sbjct: 768 RRGPPKPAVTPSSSRPVSPFSRRSSPPRSVTPIPLNVGLGFS 809
>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1150
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 119 QLNEPPPWPAVQAVLCLLVHHKDNKIEHQSQDQQQ 15
QL +PP + Q L L+H N + QSQ QQQ
Sbjct: 492 QLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQ 526
>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1164
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 119 QLNEPPPWPAVQAVLCLLVHHKDNKIEHQSQDQQQ 15
QL +PP + Q L L+H N + QSQ QQQ
Sbjct: 491 QLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQ 525
>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1165
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 119 QLNEPPPWPAVQAVLCLLVHHKDNKIEHQSQDQQQ 15
QL +PP + Q L L+H N + QSQ QQQ
Sbjct: 492 QLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQ 526
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,299,883
Number of Sequences: 28952
Number of extensions: 224166
Number of successful extensions: 677
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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