Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0640
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    49   7e-07
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac...    27   1.8  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.1  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.1  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   4.1  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
 Frame = +1

Query: 319 TELQDRXEKLFFSLLDCDIXKFMPIVYTPTVGXACQKFGLVYRRPRGLYITI--HDKGHI 492
           ++L    + LF++L+   + + +PI+YTPT G A ++F  +YR P G Y+ I  +D  +I
Sbjct: 77  SQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDIDHNDLSYI 136

Query: 493 FDIL-KTGQSMLSAQ*FLQTGERILGXG 573
              L + G+S       +   E ILG G
Sbjct: 137 KQQLSEFGKSDSVEYIIITDSEGILGIG 164



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 114 IICPNMLRGIDHIKDPRLNKGLAFTLEE 197
           I CP  L+G+  +  PR NK  AFT EE
Sbjct: 9   IECP--LKGVTLLNSPRYNKDTAFTPEE 34


>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
           Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 183 FTLEEPKL*VFTDFWHPNLKPRKNV 257
           + L  PK+   T+ WHPN+ P   V
Sbjct: 65  YPLMPPKMKFTTEIWHPNVHPNGEV 89


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -2

Query: 431 NFWHANPTVGVYTIGM-NF 378
           ++WH +P +G+ T+GM NF
Sbjct: 327 SYWHESPNMGLGTVGMGNF 345


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 199 GSSSVKARPLLSRGSFIWSMPLSMFGQIMLPVISCIFLLWSKXL 68
           G  ++ ARP+ +  ++ W+  L  F    L  I  IF  W + +
Sbjct: 494 GGMTIVARPMYNNLNYHWATSLLAFVGCGLVPIPFIFFFWGRRI 537


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -2

Query: 431 NFWHANPTVGVYTIGM-NF 378
           ++WH +P +G+ T+GM NF
Sbjct: 327 SYWHESPNMGLGTVGMGNF 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,290
Number of Sequences: 5004
Number of extensions: 48886
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)