Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0640
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   5e-23
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     29   4.3  
SB_24348| Best HMM Match : TPR_2 (HMM E-Value=2.1e-17)                 28   5.7  
SB_58421| Best HMM Match : Pro-MCH (HMM E-Value=7.7)                   28   7.5  
SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)                    27   9.9  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score =  104 bits (250), Expect = 5e-23
 Identities = 55/106 (51%), Positives = 69/106 (65%)
 Frame = +1

Query: 325 LQDRXEKLFFSLLDCDIXKFMPIVYTPTVGXACQKFGLVYRRPRGLYITIHDKGHIFDIL 504
           L +R E LFF +L     + MPIVYTPTVG AC+K+G+++RRPRGL+I+IHDKGHI DI+
Sbjct: 125 LLERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFISIHDKGHIRDIV 184

Query: 505 KTGQSMLSAQ*FLQTGERILGXGRFLALMGWGIPVGQTGPLYTGAG 642
               +       +  GERILG G  L   G GIPVG+   LYT  G
Sbjct: 185 SNWPTTEVKAIVMTDGERILGLGD-LGCCGMGIPVGKLA-LYTVCG 228



 Score = 35.9 bits (79), Expect = 0.028
 Identities = 18/53 (33%), Positives = 32/53 (60%)
 Frame = +3

Query: 48  IINGLQPXYLDQRRNMHEITGNIICPNMLRGIDHIKDPRLNKGLAFTLEEPKL 206
           +++ + P  +   R++++I         +RG D ++D  LNKGLAFTLEE ++
Sbjct: 39  VVSQISPFSMSNERHVNKIP-------TIRGTDIMRDSHLNKGLAFTLEERQI 84


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +3

Query: 90  NMHEITGNIICPNML----RGIDHIKDPRLNKGLAFTLEEPK 203
           N H   G ++ P  +      +DH+KDP+    LA TL E K
Sbjct: 373 NGHHCGGTLVSPQWVVTAAHCVDHVKDPKNYNELAITLGEHK 414


>SB_24348| Best HMM Match : TPR_2 (HMM E-Value=2.1e-17)
          Length = 463

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 201 KL*VFTDFWHPNLKPRKNVGVLP 269
           +L    DFWHP L PR+   + P
Sbjct: 440 RLIFIVDFWHPELTPRQRATLTP 462


>SB_58421| Best HMM Match : Pro-MCH (HMM E-Value=7.7)
          Length = 233

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 352 KIVFHXYLATQSNKGIYSNRRHIYRMKFGRTPTFFLGFKFGCQKS 218
           KI +  Y+  Q   G + N++     KFG TP  FL +K+    S
Sbjct: 29  KIPYGLYVLDQEINGFFKNKKV---EKFGNTPYEFLDYKYSYSDS 70


>SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)
          Length = 289

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 150 IKDPRL---NKGLAFTLEEPKL*VFTDFWHPNLKPRKN 254
           I DP L   NK  A ++  PK+ ++   W+P L+ +K+
Sbjct: 163 ISDPYLRPDNKQYAASITHPKVGIYQRSWNPRLRDKKS 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,203,364
Number of Sequences: 59808
Number of extensions: 346167
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)