Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0636
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    29   4.6  
U20864-10|AAK68355.1|  596|Caenorhabditis elegans C. elegans ADA...    25   8.8  
U20864-11|AAV58867.1|  583|Caenorhabditis elegans C. elegans ADA...    25   8.9  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 493 YRASN-DPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTL 663
           Y+A+  DP+ KGI DFW    R   +++E ++EHD PIL  L D+     +DP  F +
Sbjct: 101 YKAAEADPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKI 158



 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = +2

Query: 239 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
           L+N   + + IE+ FY  VH                R  IV G  EP  ++   P  +  
Sbjct: 33  LKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPILEGL 92

Query: 419 EEEELARAVQNA 454
           E ++LA   + A
Sbjct: 93  EGDQLAELYKAA 104


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 547  IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS 654
            IF  V +  + +  +  P+L  L  ++V  H+DP S
Sbjct: 1145 IFEQVRLEKDRLPANSYPVLSKLSTVRVSQHDDPTS 1180


>U20864-10|AAK68355.1|  596|Caenorhabditis elegans C. elegans ADA-2
           protein, isoform a protein.
          Length = 596

 Score = 24.6 bits (51), Expect(2) = 8.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 158 NDSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVD 268
           ND+    S SCR  G P+P+       +  SS +  D
Sbjct: 257 NDNSPGPSSSCRKKGPPSPKRRKTTRVMRESSSDSDD 293



 Score = 21.4 bits (43), Expect(2) = 8.8
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +2

Query: 374 EPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDK 490
           + +D +  +    +TEEE+   A + A   + E+++++K
Sbjct: 297 QASDKDTYHGMERETEEEDPPSAFETAQEFDTEDEEEEK 335


>U20864-11|AAV58867.1|  583|Caenorhabditis elegans C. elegans ADA-2
           protein, isoform b protein.
          Length = 583

 Score = 24.6 bits (51), Expect(2) = 8.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 158 NDSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVD 268
           ND+    S SCR  G P+P+       +  SS +  D
Sbjct: 244 NDNSPGPSSSCRKKGPPSPKRRKTTRVMRESSSDSDD 280



 Score = 21.4 bits (43), Expect(2) = 8.9
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +2

Query: 374 EPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDK 490
           + +D +  +    +TEEE+   A + A   + E+++++K
Sbjct: 284 QASDKDTYHGMERETEEEDPPSAFETAQEFDTEDEEEEK 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,960,841
Number of Sequences: 27780
Number of extensions: 315590
Number of successful extensions: 902
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)