Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0636
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    45   6e-05
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    45   6e-05
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    42   6e-04
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil...    37   0.012
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    36   0.029
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    27   10.0 
At2g26530.1 68415.m03183 expressed protein                             27   10.0 
At1g67140.1 68414.m07638 expressed protein                             27   10.0 

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTL 663
           KG+P FW    +N  ++SE + E DE  LK L+DIK    E+P  F L
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKL 172


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTL 663
           KG+PDFW    +N  + +E + E DE  LK L+DIK    E+P  F L
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKL 171


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTL 663
           KG+P FW    +N  ++SE + E DE  L  L+DIK    E+P  F L
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKL 171


>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105|SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
           PF00956: Nucleosome assembly protein (NAP)
          Length = 256

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 517 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 645
           +K IPDFW   F +   L E++ E D+ I K L  + V+  +D
Sbjct: 70  IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKD 112


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPI-SFTLGILLCSX*ILH 696
           +G+P+FW    +   ML+  + E DE  LK L+DI+    ED   +F L  L  S  +  
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVEDTSRNFKLEFLFDSN-LYF 184

Query: 697 KLQYLLKGY-FNEVQSPM 747
           K   L K Y  N+   P+
Sbjct: 185 KNSVLSKTYHVNDEDGPV 202


>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 371 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDD 487
           +E N+ +E ++ +R   + E+L + VQN A+   +EKK+D
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKED 236


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 300 HSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 431
           H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = -1

Query: 652  LWGLHAFAL*YLASILELVHHVLASFR*ALRHS*ICCTKSLGY-PLHWDHWRL-DSLVIL 479
            +W LH   L   A+ L  V HV A+   AL    I  T+  G+  L     RL +++V +
Sbjct: 816  IWALHGLLLTIEAAGLSFVSHVQAALGLALD---ILLTEESGWIDLSQGIGRLINAIVAV 872

Query: 478  LFLTLSDGSILYRPS*LFFFSVITPWVETFIIIRFICA 365
            L   LS GSIL+        + I+ W E   ++ ++ A
Sbjct: 873  LGPELSPGSILFSRC-KSVIAEISSWQEIPTLLEYVNA 909


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,758
Number of Sequences: 28952
Number of extensions: 287070
Number of successful extensions: 798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)