Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0635
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   1.6  
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588...    27   3.6  
04_04_0895 - 29168107-29168229,29168617-29170068                       26   4.7  

>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 203 SSCSTCKW*CTESRGRSMGRSKNRR 129
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


>01_03_0271 +
           14454681-14456949,14457222-14457476,14458800-14458864,
           14459053-14459171,14459270-14459324
          Length = 920

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 282 HKTSLLHLTRWLSSTTP 232
           +K +LL L+RWLS +TP
Sbjct: 20  NKVALLKLSRWLSGSTP 36


>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 254 DGCHRRHPRRYVSEFNISSC 195
           DGC RR+P  Y S+  I +C
Sbjct: 259 DGCIRRYPALYGSDDRIQAC 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,228,290
Number of Sequences: 37544
Number of extensions: 63143
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)