Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0635
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69910.1 68414.m08045 protein kinase family protein contains ...    25   7.1  
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ...    25   7.1  
At4g18870.1 68417.m02783 heat shock transcription factor family ...    25   9.4  
At1g33250.1 68414.m04110 fringe-related protein + weak similarit...    25   9.4  

>At1g69910.1 68414.m08045 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 248 CHRRHPRRYVSEFNISSCSTCKW*C 174
           C R    R  S F + +CS C W C
Sbjct: 130 CSRLSLLRPCSPFTLPNCSRCPWDC 154


>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 700

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 203 SSCSTCKW*CTESRGRSMGRSKNRRVLH 120
           +SCS C W CT        R   R +LH
Sbjct: 482 NSCSACPWLCTTGFFYECDREGCRFILH 509


>At4g18870.1 68417.m02783 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 291

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 62  LQRFCKIGMNGFFSLFMFCH 3
           LQRFC   +N FFS F+F H
Sbjct: 53  LQRFCFQRINTFFS-FLFSH 71


>At1g33250.1 68414.m04110 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 548

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 257 HDGCHRRHPRRYVSEFNISSCST 189
           HD C  R+P+ Y S+  + +C T
Sbjct: 291 HDDCLDRYPKLYGSDDRLHACIT 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,486,373
Number of Sequences: 28952
Number of extensions: 55982
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)