Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0634
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    85   6e-18
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...    83   2e-17
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.4  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   9.7  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    25   9.7  

>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 85.0 bits (201), Expect = 6e-18
 Identities = 52/159 (32%), Positives = 63/159 (39%)
 Frame = +1

Query: 37  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMXIRKMPLRRAVRYLKNVIEKKECIPF 216
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 217 RRFNGGVGRCAQASSLAQHRVAGPRNPPNSSCSY*GXXXXXXXXXXXXXXXXXXXXXXXX 396
           RRFNGGVGR AQ       +   P    N                               
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120

Query: 397 XXXXXXXXXXXXHGRINPYMSXPCHIRXMSQRTRRCCPK 513
                       HGR+  Y+S P HI  +        PK
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPK 159



 Score = 71.7 bits (168), Expect = 6e-14
 Identities = 30/50 (60%), Positives = 38/50 (76%)
 Frame = +3

Query: 255 KQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 404
           K+FG TQ RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP
Sbjct: 74  KEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAP 123


>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 83.4 bits (197), Expect = 2e-17
 Identities = 51/159 (32%), Positives = 62/159 (38%)
 Frame = +1

Query: 37  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMXIRKMPLRRAVRYLKNVIEKKECIPF 216
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 217 RRFNGGVGRCAQASSLAQHRVAGPRNPPNSSCSY*GXXXXXXXXXXXXXXXXXXXXXXXX 396
           RRFNGGVGR AQ       +   P                                    
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120

Query: 397 XXXXXXXXXXXXHGRINPYMSXPCHIRXMSQRTRRCCPK 513
                       HGR+  Y+S P HI  +        PK
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPK 159



 Score = 72.1 bits (169), Expect = 5e-14
 Identities = 30/50 (60%), Positives = 39/50 (78%)
 Frame = +3

Query: 255 KQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 404
           K+FG TQ RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP
Sbjct: 74  KEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAP 123


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 97  NLRVHFKNTYETAMXIRKMPLRRAVRYLKNVIEK-KECI 210
           NLRV  K T ++ + +   P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 397 RFT*MWSITSLSTSKVLLSAFDS-AFLNN 314
           R+  +W++++L  + VL+  FD   F+NN
Sbjct: 851 RYVLVWAVSNLILAIVLIQVFDGMRFINN 879


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = +2

Query: 62  ITLRNHAKRVVQTSVFTLRTHMRPQWXSERCRSVVLFVTSKT*LKRKSVFH 214
           + L NH   V + ++F +  H   QW +   +  +L  T +  L      H
Sbjct: 128 VLLYNHQGFVTEATIFNVAFHRNGQWITPSLKHGLLSGTMRKNLLENGSIH 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,292
Number of Sequences: 5004
Number of extensions: 39369
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)