Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0634
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 110 8e-25
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 100 9e-22
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 30 1.4
03_05_0745 - 27346266-27346355,27346990-27347082,27347315-273474... 29 3.2
03_01_0092 - 731069-731434,731569-733080 29 3.2
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 28 4.3
03_05_0760 - 27505860-27506148,27507647-27508580,27508677-275087... 28 5.6
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367... 28 5.6
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 27 7.5
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 27 9.9
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 110 bits (264), Expect = 8e-25
Identities = 66/149 (44%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Frame = +1
Query: 37 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMXIRKMPLRRAVRYLKNVIEKKECIPF 216
M +YSRE +NP KS KA G +LRVHFKNT ETA IRK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 217 RRFNGGVGRCAQASSLAQHRVAGPRNPPNSS---CSY*GXXXXXXXXXXXXXXXXXXXXX 387
RR+ GGVGR AQA S +H R P S+
Sbjct: 61 RRYCGGVGRTAQAKS--RHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHI 118
Query: 388 XXXXXXXXXXXXXXXHGRINPYMSXPCHI 474
HGRINPYMS PCHI
Sbjct: 119 QVNQAQKQRRRTYRAHGRINPYMSSPCHI 147
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/43 (69%), Positives = 35/43 (81%)
Frame = +3
Query: 273 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRA 401
QGRWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A
Sbjct: 81 QGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQA 123
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 100 bits (239), Expect = 9e-22
Identities = 64/183 (34%), Positives = 80/183 (43%), Gaps = 13/183 (7%)
Frame = +1
Query: 37 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMXIRKMPLRRAVRYL 180
MG+YS EP NP KS KA G +LRVHFK NT ETA +RK+PL +A RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 181 KNVIEKKECIPFRRFNGGVGRCAQASSLAQH-RVAGPRNPPNSSCSY*GXXXXXXXXXXX 357
++VI K+ IPFRR+ GGVGR AQ S + + P
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGL 120
Query: 358 XXXXXXXXXXXXXXXXXXXXXXXXXHGRINPYMSXPCHIRXMSQRTRRCCPKVAPLLMMP 537
HGRINPYMS PCH+ + K + P
Sbjct: 121 DVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180
Query: 538 QRR 546
+R+
Sbjct: 181 RRQ 183
Score = 68.9 bits (161), Expect = 2e-12
Identities = 31/43 (72%), Positives = 35/43 (81%)
Frame = +3
Query: 273 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRA 401
QGRWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A
Sbjct: 93 QGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQA 135
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 127 ETAMXIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQASSLAQHRVAG 285
E A ++ + L A Y KN++ EC+P R+ GG+ +A A+ +AG
Sbjct: 416 ENAPSLKCITLDTANFYDKNLLTMGECLPMRK--GGILEARKAFDAAKRYIAG 466
>03_05_0745 -
27346266-27346355,27346990-27347082,27347315-27347404,
27347753-27347804,27347894-27348000,27348209-27348313,
27348383-27348512,27348861-27348991,27349348-27349449,
27349557-27349655,27349771-27350040
Length = 422
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 241 RCAQASSLAQHRVAGPRNPPNSS 309
RCA ASSLA H VA PR+P ++
Sbjct: 59 RCALASSLAAHHVA-PRDPARAA 80
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 177 PQKRD*KERVYSIPSLQRRRWSLCSSKQFGTTQGRWPKKSAEFLLQLLRNAES 335
PQ ++ V + P Q + + S G + RWPK L+QL E+
Sbjct: 284 PQSKEANTVVRAAPPPQEQHDTAASGGGGGASSSRWPKAEVHALIQLRTELET 336
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 288 KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLXQTYI 425
K EF Q+ + +E S + + L + + I H+ + APCL ++
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLRSLHV 1080
>03_05_0760 -
27505860-27506148,27507647-27508580,27508677-27508792,
27508876-27508945,27509027-27509183
Length = 521
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 315 LLRNAESNAD--NKTLDVDRLVIDHIQVNRAPCLXQTYIPCSRSHQPLHVXSLPHS 476
L R++ NA+ N+TLD R D + +RA CL +T I S H P S
Sbjct: 416 LKRSSSYNAERSNETLDCARPDEDTVNTSRARCLPRTPILSSFLHPKSEAMKSPIS 471
>03_02_0983 -
12933082-12934884,12935669-12936487,12936754-12936795,
12937116-12937244
Length = 930
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 135 NGNQKDAAPSCCSLPQKRD*KERVYSIPSLQRRRWSLCSSKQ 260
NGN D + PQK ++R Y P +RRR + CS+ Q
Sbjct: 637 NGNG-DTIGATSFFPQKTKIEKRKYLSPVTKRRRLTSCSNDQ 677
>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 376 ITSLSTSKVLLSAFDSAFLNNCKRNSADFLGQRPCVVPNCLLEHSDQ 236
I + S +KVL+ + LNNC D + Q C L +H+ +
Sbjct: 1672 ILNHSANKVLIEPAKAIILNNCLALLMDGIVQEACAKGPSLFQHNQE 1718
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/65 (21%), Positives = 27/65 (41%)
Frame = +1
Query: 34 IMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMXIRKMPLRRAVRYLKNVIEKKECIP 213
++ + + + K C RGS +R+H KN P RR + +++ + I
Sbjct: 530 VLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPSRRLPVVVSGLLQHESKIS 589
Query: 214 FRRFN 228
F+
Sbjct: 590 VLHFS 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,557,963
Number of Sequences: 37544
Number of extensions: 283260
Number of successful extensions: 690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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