Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0634
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              111   4e-25
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        29   2.5  
SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              28   4.4  
SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)                     27   7.6  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  111 bits (267), Expect = 4e-25
 Identities = 49/76 (64%), Positives = 63/76 (82%)
 Frame = +1

Query: 37  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMXIRKMPLRRAVRYLKNVIEKKECIPF 216
           M RY+ +P+NP KSCKARGSNLRVH+KNT+E AM I+ M +R+A RYLK+V  KK+ +PF
Sbjct: 1   MTRYATDPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPF 60

Query: 217 RRFNGGVGRCAQASSL 264
           R++NGGVGR AQA +L
Sbjct: 61  RKYNGGVGRKAQAKNL 76



 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 37/52 (71%), Positives = 44/52 (84%), Gaps = 1/52 (1%)
 Frame = +3

Query: 270 TQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCL-XQTY 422
           +QGRWPKKSAE LLQLL+NAESNA+ K LDVD LV++HIQVN AP +  +TY
Sbjct: 81  SQGRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTY 132


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 270 LCQTACLSTATNAAVEATEWNTLFLFNHVFEVTNSTTERHLSDXH 136
           L + AC+S  +N+  + T+  T+    H F  T S  + H +D H
Sbjct: 116 LLEAACVSATSNSTAQTTDTQTIVTEAHSF--TKSFEDDHHTDDH 158


>SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 270 LCQTACLSTATNAAVEATEWNTLFLFNHVFEVTNSTTERHLSDXH 136
           L + AC+S  +N+  + T+  T+    H F  T S  + H +D H
Sbjct: 48  LLEAACVSATSNSTAQTTDTQTIVTEAHSF--TKSFEDDHHTDDH 90


>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = +3

Query: 234 RWSLCSSKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRL---VIDHIQVNRAP 404
           RW +C     G+  G    KS +FL     + ++    + L VDRL   VI  + +   P
Sbjct: 109 RWHICKGFLEGSCTGTHCDKSHDFL-----DKDNRHKAECLKVDRLPNVVIKKLVLKSLP 163

Query: 405 CLXQTYIPCSRSHQPLHVXSLP 470
            L ++YI     H  L V   P
Sbjct: 164 SLCESYIRGEICHDCLSVHLCP 185


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 175 YLKNVIEKKECIPFRRFNGGVGRCAQASSLAQHRVAGPRNPPNSSCSY 318
           Y  +  + ++C P+R +     R  Q +   QHR   P  PP+   +Y
Sbjct: 498 YRTDSTQHRQCAPYRLYPAQTVRTVQTT---QHRQCAPYRPPSIDSAY 542


>SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)
          Length = 120

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 198 LFNHVFEVTNSTTERHLSDXHCGLICVLKVNTEV*TTRFA 79
           L +H+ +V+++       D   GL+C L ++ E+  T+FA
Sbjct: 6   LLDHLLDVSSAYLAEEALDMPIGLVCRLVLSDEMFVTQFA 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,748,665
Number of Sequences: 59808
Number of extensions: 334067
Number of successful extensions: 919
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)